RetrogeneDB ID:
retro_olat_40
Organism:
Medaka ( Oryzias_latipes )
Location:
7:7527706-7528290 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
74.75 %
Coverage:
57.69 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_40
ATGCGGTTAAAGGAGCTCTCCATGCAGGTGAAAGGAGCCATCATTAAGCTGAGAAAACAG
TAAAAAAAAAAACATGCGAGTTATTTCTACAATATTAGGAGTGGCAAAATCAACAGTGTG
GTACATCCTGAGAAAGAAAGAAAGCACTGGTGAACTCAGCAACACAAAAGACCTGGACGT
CCATGGAAGACAACAGTGGTGGATGAGGGCAGAATCATTTCCATGGTGAAGAGGAACCCG
TTCACAACAGCCAACTAAGTGAACAACACTCTCCAGGAGGTAGACGTATCAATATCCAAG
TCTACCATAAAAAGAAGACTGCATGAAAGTAGAAACAGAAGGTACACTGCAAGATGCAAG
CCACTCATGAGCCTCATGAATAGGAAGGCTGGATTGGACTTTGCTAAAAAGCATCTAAAA
AAGCCAGAACAGTTCTGGAAAAACATTCTTTGGACAGATGAAACCAAATCAACCTCTACC
AGAATGATGGCAAGAGAAAAGTATGGAAAAGGCGTGGAGAAGCTCATGATCCAAAGCACA
CTACATCATCAGTAAAACACTGTGGATGCAGTGTGATGGGCTGG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LKTKELSKYTRNQTVDLHQ-AGRAGLNSVHALLGVATSTVWSILRKKESTGEISNTK-RPGRPQKTTVVDDGRIISRVKRNPFTTANQVNNTLQEVGGSI
...KELS.........L...............LGVA.STVW.ILRKKESTGE.SNTK.RPGRP.KTTVVD.GRIIS.VKRNPFTTAN.VNNTLQEV..SI
Retrocopy
MRLKELSMQVKGAIIKLRK\SXXXXMRVISTILGVAKSTVWYILRKKESTGELSNTK/RPGRPWKTTVVDEGRIISMVKRNPFTTAN*VNNTLQEVDVSI


Parental protein
SKSTMKRRLHESRSRGYTARCKPLISLKNRKARLDFAKKHLKKPAQFWKNILWTDETK-INLYQNDGKRKVWRRRGEAPDPKHTTSSVKHGGGSVMVW
SKST.KRRLHESR.R.YTARCKPL.SL.NRKA.LDFAKKHLKKP.QFWKNILWTDETK.INLYQNDGKRKVW.RRGEA.DPKHTTSSVKH.G.SVM.W
Retrocopy
SKSTIKRRLHESRNRRYTARCKPLMSLMNRKAGLDFAKKHLKKPEQFWKNILWTDETK/INLYQNDGKRKVWKRRGEAHDPKHTTSSVKHCGCSVMGW


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide