RetrogeneDB ID:
retro_olat_41
Organism:
Medaka ( Oryzias_latipes )
Location:
7:26826700-26827147 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.18 %
Coverage:
64.78 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_41
CTCTTTTCAGCAGCTCTGCAGGACAGAGACTCTCTTGTTGATGCAGAAACCAACATCTAT
GCAAAACGTGAAGGAGAAGACATCACTGTTAGATGTTATCTTGGATATTTAGGGAGCAGA
AAGCTGCTCTGTAAGGAAACATGTGAAGAAGGAAACATTCTCATAGACACATATGGAGAT
GAAGATCAGAGAGGAAGATACAGCATTAAATATGAGTATCGATATATTGGATCAAGTATT
TTAGATGTGACGATCACTAAACTCACAAAGTCAGACTCAGGTTTGTACAGATGTGAATTA
CAAGAAGACTGGCATCCAGATTCAGAAGACAACTTCAAAATAATCGTTACAGAAGGTGAG
TTTGATCCTCAAAATCATCAAAATATTTCTCTGTGAAAATTTGTGCCTTTTGTTTCATGT
TTATTACAGTTTTTTTACCTCTGCTTA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LFLTALQDRDSLVDAETNIYAKREGEDITVRCYLGYLGSRKLLCKETCEEGNILIDTYGDEAQRGRYSIKYEYRYIRSSILDVTITKLIKSDSGLYRCEL
LF..ALQDRDSLVDAETNIYAKREGEDITVRCYLGYLGSRKLLCKETCEEGNILIDTYGDE.QRGRYSIKYEYRYI.SSILDVTITKL.KSDSGLYRCEL
Retrocopy
LFSAALQDRDSLVDAETNIYAKREGEDITVRCYLGYLGSRKLLCKETCEEGNILIDTYGDEDQRGRYSIKYEYRYIGSSILDVTITKLTKSDSGLYRCEL


Parental protein
QKDLSPDSEDNFKIIITEASVTSAPTRTVELSPTKPISFGLLLYVSLTL
Q.D..PDSEDNFKII.TE............L....P....LL....L.L
Retrocopy
QEDWHPDSEDNFKIIVTEGEFDPQNHQNISL*KFVPFVSCLLQFFYLCL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide