RetrogeneDB ID:
retro_olat_42
Organism:
Medaka ( Oryzias_latipes )
Location:
7:26859139-26859550 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.54 %
Coverage:
60.43 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_42
CTCTTTTCTGCAGCTCTGCAGGACAGAGACTCTCTTGTTGATGCAGAAACCAACATCTAC
ACAAAACGTGAAGGAGAAGACATCACTATTAGATGTAATCTTACATTTTCAGGGAGCAGA
AAGCTGCTCTGTAAGGAAACATGTGAAGAAGGAAACATTCTCATAGAAACATATGGAGAT
GAAGATCAGAGAGGAAGATATAGCATTAAATATGAATATCGATATATTCGATCAAGTTTT
TTAGATGTGACGATCACTAAACTCACAAAGTCAGACTCAGGTTTGTATACATGTAAGTTG
TGTAAAGGATGGAGTCCAGATTCAGAAGACAACTTCAAAATAATCGTTACAGAAGGTGAG
TTTGATCCTCAAAATCATGAAAATATTTCTCTGTGAAAATCTGTGTCTTTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LFLTALQDRDSLVDAETNIYAKREGEDITVRCYLGYLGSRKLLCKETCEEGNILIDTYGDEAQRGRYSIKYEYRYIRSSILDVTITKLIKSDSGLYRCEL
LF..ALQDRDSLVDAETNIY.KREGEDIT.RC.L...GSRKLLCKETCEEGNILI.TYGDE.QRGRYSIKYEYRYIRSS.LDVTITKL.KSDSGLY.C.L
Retrocopy
LFSAALQDRDSLVDAETNIYTKREGEDITIRCNLTFSGSRKLLCKETCEEGNILIETYGDEDQRGRYSIKYEYRYIRSSFLDVTITKLTKSDSGLYTCKL


Parental protein
QKDLSPDSEDNFKIIITEASVTSAPTRTVELSPTKPISF
.K..SPDSEDNFKII.TE......P......S..K..SF
Retrocopy
CKGWSPDSEDNFKIIVTEGEFD--PQNHENISL*KSVSF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide