RetrogeneDB ID:
retro_olat_44
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold1125:1337-1745 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.91 %
Coverage:
76.84 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_44
CGTAAAGTTACCATAATATATAAAAGGGCCTCTTCTTGTGTCCTTGCAGACCTCCCCCAG
TGTTGGATGACTAAAGATAAAGATCTCTGCATCCAACAGAGGAACTTCAGAGTGGAACAG
GAGGAACCAGAACTTTCACACATTAAAGAGGAAATGCAGGAACCAGAACCTCTACAGATG
AAAGAAGAACCAGGGGAACTCTTCATCTGTCAGGATAAAGATCAGCGTGATCTGAAGCAG
GAGACTGATACCTCGATGGAGATTCCTACTTATGAGGAAGATGGGAACAGTGAAGCAGAC
ATAATTAATCAGCAGAGCTTTAATGTAACTGATAGTCAGGATCAAGAAGGAAACCAACAT
GAAAAATCAACATCAACTACAGATGAAAAGACAGAATTGACATCAACT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RLLDVIWKPQLQLHHIVISQHRMTEEEDLCNQQWNFRVEQEEPEPPQIKEDQEEPEPPQIKEEPGELFISQDEDQLDLKQETDTLMEIPTYEKDENSEAD
R....I.K...........Q..MT...DLC.QQ.NFRVEQEEPE...IKE...EPEP.Q.KEEPGELFI.QD.DQ.DLKQETDT.MEIPTYE.D.NSEAD
Retrocopy
RKVTIIYKRASSCVLADLPQCWMTKDKDLCIQQRNFRVEQEEPELSHIKEEMQEPEPLQMKEEPGELFICQDKDQRDLKQETDTSMEIPTYEEDGNSEAD


Parental protein
LNNQQNFNVTDSQGEEGNQHEESTSTTDEETESTST
..NQQ.FNVTDSQ..EGNQHE.STSTTDE.TE.TST
Retrocopy
IINQQSFNVTDSQDQEGNQHEKSTSTTDEKTELTST


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide