RetrogeneDB ID:
retro_olat_46
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold1237:590-971 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.91 %
Coverage:
69.02 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_46
GTTCTGCCCCAGCATTGGATGCCTGAAGAAGAAGATCTTTGCAACCAGCAGAGGAACTTC
AGAGTGGAACAAGAGGAACCAGAAGCTCCTCAGATTAAAGAGGAACCAGGGGAACTCTGC
ATCAGTCAGGATGAAGATCAGCTTGATCTGAAGCAGGAGACTGATACCTTGATGGAGATT
CCTACTTATGAGGAAGATGAGAACAGTGAAGCAGATCTAAACAATCAGCAGAGCTTTGAT
GTAACTGATGGTCAGGATGAAGAAGGAAACCAACATGAAGAGTCAACATCAACTACAGAT
GAAGAGACAGACCCACAGAACAGAGATCAGAGGAAGAGGAGGGACAGAAGTCATGTCCAA
AGTGTGGACAGCTCTCACATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VLPQHWMTEEEDLCNQQRNFRVEQEEPEPPQIKEEPEELCISQDEDHLHLKQETDTLMEIPTYEEDENSEADLNNQQSFNVTDSQDEEGNQHEESTSTTD
VLPQHWM.EEEDLCNQQRNFRVEQEEPE.PQIKEEP.ELCISQDED.L.LKQETDTLMEIPTYEEDENSEADLNNQQSF.VTD.QDEEGNQHEESTSTTD
Retrocopy
VLPQHWMPEEEDLCNQQRNFRVEQEEPEAPQIKEEPGELCISQDEDQLDLKQETDTLMEIPTYEEDENSEADLNNQQSFDVTDGQDEEGNQHEESTSTTD


Parental protein
EETDPQNRDKRKRRDRRHVQSVDSSHM
EETDPQNRD.RKRRDR.HVQSVDSSHM
Retrocopy
EETDPQNRDQRKRRDRSHVQSVDSSHM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide