RetrogeneDB ID:
retro_olat_47
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold1250:7922-8303 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
88.19 %
Coverage:
69.02 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_47
GTCCTTCCCCAGCATTGGGTGACTCAAGAGGAGGATTTCTGCAACCAGCAGATGAACTTC
AGAGTGGAACAGGAGGAACCAGAACCTCCACAGATTAAAGAGGAGCCAGAGGAGATCTGC
ATCAGTCAGGATGAAGATCAGCTTGATCTGAAGCAGGAGACTGATACCATGATGGAGATT
CCTACTTATGTGGAAGATGAGAACAGTAAAGCAGATCTAAACAATCAGCAGAGCTTTAAT
GTAACTGATAGTCAGGATGAAGAAGGAAACCAACATGAAGAATCAACATCAACTACAGAT
GAAGAGACTGACCCACAGAACAGAGATCAGAGGAAGATAAGAGACAGAAGTCATGTCCAA
AGTGTGGACACTTCTCACATT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VLPQHWMTEEEDLCNQQRNFRVEQEEPEPPQIKEEPEELCISQDEDHLHLKQETDTLMEIPTYEEDENSEADLNNQQSFNVTDSQDEEGNQHEESTSTTD
VLPQHW.T.EED.CNQQ.NFRVEQEEPEPPQIKEEPEE.CISQDED.L.LKQETDT.MEIPTY.EDENS.ADLNNQQSFNVTDSQDEEGNQHEESTSTTD
Retrocopy
VLPQHWVTQEEDFCNQQMNFRVEQEEPEPPQIKEEPEEICISQDEDQLDLKQETDTMMEIPTYVEDENSKADLNNQQSFNVTDSQDEEGNQHEESTSTTD


Parental protein
EETDPQNRDKRKRRDRRHVQSVDSSHM
EETDPQNRD.RK.RDR.HVQSVD.SH.
Retrocopy
EETDPQNRDQRKIRDRSHVQSVDTSHI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide