RetrogeneDB ID:
retro_olat_48
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold1457:30187-30476 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.84 %
Coverage:
92.45 %
Frameshifts:
4
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_48
GGGATCGTCAATATCGAGCGTGGTCATGACCTCGGTTGTAAGACGTCGTTTATAAGCAAA
TTTCAGTGGGTTTTCGGTTTGCCGAAAAAGGTTTTTAAGTAGCGCAGCGCCTCCAACGGA
AGCCTCTGCCACAGCGGCGAGATGACTGCATGCATGGCTGCAGCGGCTGCTCTGCTCGAA
CGAAAACAACTTTCTCGGGAGGTTCCCCAAATCTTTTCATCGGTCTAATACATTTTGTGT
AAAATTATTTTGCAATTATTTCGGTTTTTTTATTTTGAATACATGTCTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GIVVIERGHDLGCKTSF-KKTNFSGFSVRRKSF-LSSAALPMEASAT-RRGYDCMHGCSS-RLCSNENYFLGRFPKSFQKHGSVILIVFALFLYFYTFYT
GIV.IERGHDLGCKTSF..K....GF....K.F.LSSAA.P.EASAT.RR..DCMHGCS...LCSNEN.FLGRFPKSF..........F.....F....T
Retrocopy
GIVNIERGHDLGCKTSF/YKQISVGFRFAEKGF/LSSAAPPTEASAT\RRD-DCMHGCSG/LLCSNENNFLGRFPKSFHRSNTFCVKLFCNYFGFFILNT


Parental protein
II
..
Retrocopy
CL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide