RetrogeneDB ID:
retro_olat_49
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold1589:21094-21457 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
89.26 %
Coverage:
65.76 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_49
GTTCTCCCCCAGCATTGGATGACTGAAGAGGAAGACCTCTGCAACCAGCAGAGAAACTTC
AGAGTGGAACAAAAGGAACCAGATACTTCACTGATCAAAGAGGAACCAGGGGAACTCTGC
ATCAGTCAGGATGAAGATCAACTTGATCTGAAGCAGGAGACTGATACCTTGATGGAGATT
CCTACTTATGAGGAAGATGAGAACAGTGAAGCAGATCTAAACAATCAGCAGAGCTTAAAT
GTAACTGATAGTCAGGATGAAGAAGGAAACCAACATGAAGAATCAACATCAACTACAGAT
GGAGAGACAGACCCACAGAACAGAGATCAGAGGAAGAGGAGGGACAGAAGTCATGTCCAA
AAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VLPQHWMTEEEDLCNQQRNFRVEQEEPEPPQIKEEPEELCISQDEDHLHLKQETDTLMEIPTYEEDENSEADLNNQQSFNVTDSQDEEGNQHEESTSTTD
VLPQHWMTEEEDLCNQQRNFRVEQ.EP....IKEEP.ELCISQDED.L.LKQETDTLMEIPTYEEDENSEADLNNQQS.NVTDSQDEEGNQHEESTSTTD
Retrocopy
VLPQHWMTEEEDLCNQQRNFRVEQKEPDTSLIKEEPGELCISQDEDQLDLKQETDTLMEIPTYEEDENSEADLNNQQSLNVTDSQDEEGNQHEESTSTTD


Parental protein
EETDPQNRDKRKRRDRRHVQS
.ETDPQNRD.RKRRDR.HVQ.
Retrocopy
GETDPQNRDQRKRRDRSHVQN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide