RetrogeneDB ID:
retro_olat_5
Organism:
Medaka ( Oryzias_latipes )
Location:
12:20299606-20299975 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
99.17 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RNF212 (2 of 2)
Parental gene aliases:
No gene alias available
Parental gene description:
ring finger protein 212 [Source:HGNC Symbol;Acc:27729]

Genomic region (view in browser)





>retro_olat_5
ATGTCGTTTTGGGTCTACTGTAACTCCTGCTTTCTCTCCGCCGCTGCTGACCGTCAGCTG
GCCGTCACCACCTGTGGTCATGTCATCTGCAGTGTCTGCTACCAGAAAGGCAAACAAAAA
AACTGTTTAATATGCAGCAGCCAGTGCCAAATATCCCCACTTTCTGACAAAAGCAGCTCT
GAAGTGAAGACTTTGTTCTCAGACATCAACGTCGTGACGACTAAGCACTTGACGGAAATC
AGCAAAGTGATATCGTTCCAGTCAAGACACCAGAGAAAGCTGCTGACTCACTACAAGAAA
AGAAATGAAAAACTGGAAGAAACATTCGTGAAAATGAAGCAAGAAATGCAGAACATGGCA
AAGAAGCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSFWVYCNSCFLSAAADRQLAVTTCGHVICSVCYQKGKQKNCLICSSQCQISPLSDKSSSEVKTLFSDINVVTTKHLTEISKVISFQSRHQRKLLTHYKK
MSFWVYCNSCFLSAAADRQLAVTTCGHVICSVCYQKGKQKNCLICSSQCQISPLSDKSSSEVKTLFSDINVVTTKHLTEISKVISFQSRHQRKLLTHYKK
Retrocopy
MSFWVYCNSCFLSAAADRQLAVTTCGHVICSVCYQKGKQKNCLICSSQCQISPLSDKSSSEVKTLFSDINVVTTKHLTEISKVISFQSRHQRKLLTHYKK


Parental protein
RNEKLEETFVKMKQEMQKMAK
RNEKLEETFVKMKQEMQ.MAK
Retrocopy
RNEKLEETFVKMKQEMQNMAK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide