RetrogeneDB ID:
retro_olat_50
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold1700:16668-17085 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.73 %
Coverage:
75.54 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_50
ATAGTATATAAAAGGACCTGTTCTTGTGTCCTTGCAGTCCTCCCCCAATGTTGGATGAAT
AAAGAGGAAGATCTCTGCATCCAGCAGAGGAACTTCAGAGTGGAACAGGAAGAACTGGAA
CCTTCACAGACTAAAGAGGAACCAGGGGAACTTTGCATCAGTCAGGATGAAGAGCAGCTT
GATCTGAAGCAGGAGACTGATACCTTGATGGAGATTCCTACTTATGAGGAAGATGAGAAC
AGTGAGGCAGATCTAAACAATCAGCAGAGCTTTAATGTAACTGATAGTCAGGATGAAGAA
GGAAACCAACATGAAGAATCAACATCAACTACAGATGAAGAGACAGACCCACAGAACAGA
GATCAGAGGAAGAGGAGGGACAGAAGTCATGTCCAAAGTGTGGACAGCTCTCACATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VIWKPQLQLHHIVLPQHWMTEEEDLCNQQRNFRVEQEEPEPPQIKEEPEELCISQDEDHLHLKQETDTLMEIPTYEEDENSEADLNNQQSFNVTDSQDEE
...K........VLPQ.WM..EEDLC.QQRNFRVEQEE.EP.Q.KEEP.ELCISQDE..L.LKQETDTLMEIPTYEEDENSEADLNNQQSFNVTDSQDEE
Retrocopy
IVYKRTCSCVLAVLPQCWMNKEEDLCIQQRNFRVEQEELEPSQTKEEPGELCISQDEEQLDLKQETDTLMEIPTYEEDENSEADLNNQQSFNVTDSQDEE


Parental protein
GNQHEESTSTTDEETDPQNRDKRKRRDRRHVQSVDSSHM
GNQHEESTSTTDEETDPQNRD.RKRRDR.HVQSVDSSHM
Retrocopy
GNQHEESTSTTDEETDPQNRDQRKRRDRSHVQSVDSSHM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide