RetrogeneDB ID:
retro_olat_52
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold2790:2339-2717 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.92 %
Coverage:
68.48 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_52
CTCCTCCAGTGTTGGATGACTAAAGAGGAAGATCTCTGCATCCATCAGAGGAGCTTCAGA
GTAGAACGGGAAGAACCACAACTTCCACAGATTAAAAAGGAACCAGGGGAACTCTACATC
AGTCAGGATGAAGATCAGCTTGATCTGAAGCAGGAGACTGATACCTTGATGGAGATTCCT
ACTTATGAGGAAGACGAGAACAGTGAAGCAGATCTAAACAATCAGCAGAGCTTTAATGTA
ACTGATAGTCAGGATGAAGAAGGAAACCAACATGAAGAATCAACATCAACTACAGATGAA
GAGACAGGCCCACAGAACAGAGATCAGAGGAAGAGGAGGGACAGAAGTCAAGTCCAAAGT
GTGGACAGCTCTCACGTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LPQHWMTEEEDLCNQQRNFRVEQEEPEPPQIKEEPEELCISQDEDHLHLKQETDTLMEIPTYEEDENSEADLNNQQSFNVTDSQDEEGNQHEESTSTTDE
L.Q.WMT.EEDLC..QR.FRVE.EEP..PQIK.EP.EL.ISQDED.L.LKQETDTLMEIPTYEEDENSEADLNNQQSFNVTDSQDEEGNQHEESTSTTDE
Retrocopy
LLQCWMTKEEDLCIHQRSFRVEREEPQLPQIKKEPGELYISQDEDQLDLKQETDTLMEIPTYEEDENSEADLNNQQSFNVTDSQDEEGNQHEESTSTTDE


Parental protein
ETDPQNRDKRKRRDRRHVQSVDSSHM
ET.PQNRD.RKRRDR..VQSVDSSH.
Retrocopy
ETGPQNRDQRKRRDRSQVQSVDSSHV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide