RetrogeneDB ID:
retro_olat_53
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold2868:6979-7743 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.72 %
Coverage:
84.67 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_53
ACCATTGGGGCCATTATCCGGAAGTGGAAAGAACACGGCATTACCATAAACCTGCCACGG
CCAGGTGCTCCTCGCAAGATTTCAGACAGAGGCGTCAGAACAATCATCAGAAGGGTTCTC
CAACAGCCCAGGACCATTCGTGGAGATTTTCAGAAAGACCTGGAATCAGCAGGTACCGTT
GTTTCAAAGAAAATAATAAGTAATGCACTTATCCGCCATGGCCTCCATGCACGCACACCA
CGCAAAAACTCCATTTTTGAAGAAGAAGCATGTTGAAGCTTGTTTGGAGTTAGCGACAAC
ATTTGGATAAACCCATGACATTCTGGGAGAAGATACTCTGGTCAGATGAGACCAAAATTG
AACTCTTTGGATGTCATAAGACACAACATGTTTGGAGGAAAAATGGCACCGCACATCTCC
CCCAAAACACCATACCAACAGTCAAGTTTGGAGGTAGGAGTATCATGGTGTGGGGCTGTT
TTTCAGCATGCGGTACTGGTAGACTTCATGTCATTGAAGGAATAATGACTGGAGAAAAGT
ATCGAGACATTCTTGATCAGAATCTGCTGTCATCTGCCAGGCTGCTGAAGATGAAAAGAG
GGTGGATCTTTCAGCAAAACAACGATCCCAAGAACACAGCCAAGGTAACACTCAACTGGT
TGAAGAAAAAGAAAATAAAGCTGCTAGAATGGCCCAGTCAATCCCCAGACTTGAATCCAA
TTGAAAATCTTTGTAAAGAACTCAAGATCCGGGTTCACAGAAGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TFGAIIRKWKEHGITINLPRPGVPHKISDRGVRTKLNESTVGPRDDTGELQKDLESAGTVVSKKTISNALNRHGLHARTPRK-TPFLKKKHVEARLEFAT
T.GAIIRKWKEHGITINLPRPG.P.KISDRGVRT........PR...G..QKDLESAGTVVSKK.ISNAL.RHGLHARTPRK.TPFLKKKHVEA.LE.AT
Retrocopy
TIGAIIRKWKEHGITINLPRPGAPRKISDRGVRTIIRRVLQQPRTIRGDFQKDLESAGTVVSKKIISNALIRHGLHARTPRK\TPFLKKKHVEACLELAT


Parental protein
-HLDKPMTCWEKILWSDETKIELFGCHKTQHVWRKNGSAHHPQNTIPTVKFGGGSIMAWGCFSACGTGRLHIIEGIMTGEKYPDILDQNLLSSARLLKMK
.HLDKPMT.WEKILWSDETKIELFGCHKTQHVWRKNG.AH.PQNTIPTVKFGG.SIM.WGCFSACGTGRLH.IEGIMTGEKY.DILDQNLLSSARLLKMK
Retrocopy
\HLDKPMTFWEKILWSDETKIELFGCHKTQHVWRKNGTAHLPQNTIPTVKFGGRSIMVWGCFSACGTGRLHVIEGIMTGEKYRDILDQNLLSSARLLKMK


Parental protein
RGWIFQQDYHPKHTAKVTLNWLKKKKIKLLEWPSQSPDLNPIENLWKELKIRVHRR
RGWIFQQ...PK.TAKVTLNWLKKKKIKLLEWPSQSPDLNPIENL.KELKIRVHRR
Retrocopy
RGWIFQQNNDPKNTAKVTLNWLKKKKIKLLEWPSQSPDLNPIENLCKELKIRVHRR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide