RetrogeneDB ID:
retro_olat_54
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold3368:2187-2571 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.09 %
Coverage:
69.02 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_54
GTTGTCCCTCAGCACTGGGTGACTGAAGAGGAAGATCTATGCTACCAGCAAAGGAACTTC
CAAGTGGAACGGGAGGATCCAGAACCTCTAAATTATAAAGAGGAGCAGGAAGAAGAGATC
TGCATCAGTCATGATGAAGATCAGCTTGATCTGAAGCAGGAGACTGATACTTTGATGGAG
ATTCCTACTATTGAGGAAGATGAGAACAGTGAAGCAGATCTAAACAATCAGCAGAGCTTT
AATGTAACTGATAGTCAGGATGAAGAAGGAAACCAACATGAAGAATCATCATCAACTACA
GATGAAGAGACAGACCCACAGAACAGAGATCAGAGGAAGAGAAGAGACAGAAGTCATGTC
CAAAGTGTGGACAGCTCTCACATT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VLPQHWMTEEEDLCNQQRNFRVEQEEPEPPQIKEEPEE-LCISQDEDHLHLKQETDTLMEIPTYEEDENSEADLNNQQSFNVTDSQDEEGNQHEESTSTT
V.PQHW.TEEEDLC.QQRNF.VE.E.PEP...KEE.EE..CIS.DED.L.LKQETDTLMEIPT.EEDENSEADLNNQQSFNVTDSQDEEGNQHEES.ST.
Retrocopy
VVPQHWVTEEEDLCYQQRNFQVEREDPEPLNYKEEQEEEICISHDEDQLDLKQETDTLMEIPTIEEDENSEADLNNQQSFNVTDSQDEEGNQHEESSSTX


Parental protein
DEETDPQNRDKRKRRDRRHVQSVDSSHM
..................HVQSVDSSH.
Retrocopy
XXXXXXXXXXXXXXXXXXHVQSVDSSHI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide