RetrogeneDB ID:
retro_olat_55
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold378:271188-272712 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.08 %
Coverage:
88.35 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_55
AAATGGATCCAGCCCGACCTTCCCAGCCGCTGCAAATGAAGCCTGGGGGCGTCACAGGCC
GACTCTCCTCATCTGCAAATTCCGAGGGCCCCCACTCCAACCGTCCTTCCCAACATCCTG
CACAGGATTGGTGACACCCCCATGGTGCGCATCAACAAGATCCCCAAAGACTTTGGACTC
AAGTGTGAACTATTGGCCAAGTGTGAGTTCTTCAATGCCGGCGGCAGCGTGAAGGACAGG
ATCAGCCTGCGCATGGTGGAGGACGGCGAGCGGGCCGGTATTCTCAAACCCGGAGACACC
ATCATCGAGCCCACGGCCGGAAACACCGGGATCGGGCTGGCTCTGGCTGCCGCCGTTAAG
GGATACCGCTGCATCATAGTCATGCCGGAGAAGATGAGCATGGAGAAGGTGGATGTCCTC
CGAGCTCTTGGAGCTGAGATCGTCTGCACCCCTACCAGCGCTCGTTTCGATTCGCCAGAG
TCTCATGTGGGCGTGGCCTGGTGCCTCAAGAACGAGATCCCCAATTCGCACATCCTGGAT
CAGTACCGCAACCCAAGCAACCCCCTGGCTCACTATGACTCTACCGCAGAGGAAATCCTG
GAGCAGTGTGATGGTAAAGTTGACATGCTGGTGGCTGGCGCATGTACCGGCGGCACCATC
ATCGCTCGCAAGCTTAAGGACAAATGCCCAAACGTCAAGATTGTCGGTGTTGACCCTGAA
GGCTCCATCTTGGCTGAGCCTGAACACTTGAACAAAACTGATAAGGCCCAGTATGAGGTG
GAGGGCATCGGCTATGATTTTATTCCTACCGTGCTCGACAGATCAGTTGTTGATACTTGG
TACAAATCCAACGGCGAGGAGTCCTTCAACATGTCCCGGATGCTCATCAGAGAGAAAGGC
CTGTTGTGCGGAGGCAGCTCCGGGACCGCCATGGCCGCTGCCGTCGTGGTCACCAAAGAG
CTGAAGGAGGGCCAGCGCTGTGTGGTCATCCTGCCAAACTCCATCCGCAACTACATGTCC
AAATTCTTGAACGACAAGTGGATGTTTGAGAAAGGTTTCCTGAGCGAGGGGGTTTTGATG
GTGAAGAAGCCCTGGTGGTGGAACTTGAAGCTGCAGGGTTTGAACATGTCGGCCCCCTTA
ACCGTCCTTCCAACCGTCAGCTGCCAGAACACCATTAAAATCCTGAAGGAGAAAGGGTTC
GACCAGGCGCCTGTAGTGGACGATGCAGGGTTTATCCTGGGCATGGTGACTCTTGGGAAC
ATGTTGTCGTCCATTCTTGCAGGAAAGATCCGACTGTCCAACCCCATCAGTAAAGTCTAC
TACAAGCAGTTCCGACAGATTCGCCTGACTGACAACCTGGGAAAGCTTTCCCGAATTCCT
GAGACAGACCACTTTGCTCTGGTGGTTCACGAACAGATTCAGTATCTGACAGACGGATCC
GCCGTCCTGAAGCAGATGGTGTTCGGCATGATTACCGCCGTGGACCTGCTCAACTTTGTC
ACGGGCCGAGAAAGGAGGGAGCGC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KWIRPDLPSRCTWRPGAPVSESPHSHPERPKPASILPSVLDHIGHTPLIRLNKIPKEFGLKCEVLVKCEFFSAGGSIKDRIALRMVEDAERAGILQPGDT
KWI.PDLPSRC....GA....SPH....R......LP..L..IG.TP..R.NKIPK.FGLKCE.L.KCEFF.AGGS.KDRI.LRMVED.ERAGIL.PGDT
Retrocopy
KWIQPDLPSRCK*SLGASQADSPHLQIPRAPTPTVLPNILHRIGDTPMVRINKIPKDFGLKCELLAKCEFFNAGGSVKDRISLRMVEDGERAGILKPGDT


Parental protein
IIEPTSGNTGIGLALIAAVKGYKCIIVMPEKMSMEKEAVLKSLGADIVRTPTSAAFDSPESHICTAWRLKNEIPNSHILDQYRNASNPLAHYDTTAEEIL
IIEPT.GNTGIGLAL.AAVKGY.CIIVMPEKMSMEK..VL..LGA.IV.TPTSA.FDSPESH...AW.LKNEIPNSHILDQYRN.SNPLAHYD.TAEEIL
Retrocopy
IIEPTAGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVCTPTSARFDSPESHVGVAWCLKNEIPNSHILDQYRNPSNPLAHYDSTAEEIL


Parental protein
EQCDGKLEMLVAGAGTGGTLTGVSRKLKEKCPDVKIVGVDPEGSVLIHSE--GTDDHTTFEVEGIGYDFVPTVLDRSLVDMWYKSNDAETFTMSRKLIRE
EQCDGK..MLVAGA.TGGT.....RKLK.KCP.VKIVGVDPEGS.L...E.....D....EVEGIGYDF.PTVLDRS.VD.WYKSN..E.F.MSR.LIRE
Retrocopy
EQCDGKVDMLVAGACTGGTI--IARKLKDKCPNVKIVGVDPEGSILAEPEHLNKTDKAQYEVEGIGYDFIPTVLDRSVVDTWYKSNGEESFNMSRMLIRE


Parental protein
EGLLCGGSSGSAMAAAVKMAGDLKEGQRCVVILADSVRNYISKFLSDQWMVERGFLSLEGQMNKKVWWWSHTVQSLQVPAPLTVAPSLSCQKAVQILRAK
.GLLCGGSSG.AMAAAV.....LKEGQRCVVIL..S.RNY.SKFL.D.WM.E.GFLS....M.KK.WWW....Q.L...APLTV.P..SCQ....IL..K
Retrocopy
KGLLCGGSSGTAMAAAVVVTKELKEGQRCVVILPNSIRNYMSKFLNDKWMFEKGFLSEGVLMVKKPWWWNLKLQGLNMSAPLTVLPTVSCQNTIKILKEK


Parental protein
TFDQAPVVDETGAILGMVTLGTILSSVHDGKVELSDAVGAVLCKDFQQVHLTDTLEKLSFFLKAHNFVLVVRDHIQYDSDGSAHLRHSVFGVVTPIDLLH
.FDQAPVVD..G.ILGMVTLG..LSS...GK..LS.....V..K.F.Q..LTD.L.KLS.......F.LVV...IQY..DGSA.L...VFG..T..DLL.
Retrocopy
GFDQAPVVDDAGFILGMVTLGNMLSSILAGKIRLSNPISKVYYKQFRQIRLTDNLGKLSRIPETDHFALVVHEQIQYLTDGSAVLKQMVFGMITAVDLLN


Parental protein
YITSHADQER
..T.....ER
Retrocopy
FVTGRERRER


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide