RetrogeneDB ID:
retro_olat_56
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold645:73186-73909 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
90.53 %
Coverage:
51.82 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_56
TGGGAAATTTTACCTCTATCCCTACTGGGTAGAGTAGAAGCGGTGAGGATGAATGTGCTT
CCTCGTCTTTTGTTTTTGTTTCAATCTCTTCCGGTAAACATTCCGGTGTCAACTTTCAAC
GTGTTAAACAAAATGATTACTCAATTTATATGGCAGCGAAAAAGACCCAGAATTAGATTA
AAAACATTATTTTTGCCAAAAAATAAGGGAGGTTTGGCTCTACCAAACCTAAAATTTTAC
TATTGGGCAGCTCAGTTGACGGCAATCGTGGCCTGGATTAGAGAGGATGAGGAAGTAAAA
TGGTTTAAAGTGGAACAAGGTGAAACTAAAGGGCTGTGGCTGTCTACTCTTCCATTTACT
GATTTAAAATCTGTCAACAAAATCAAAATTGGAAACAATTGGATCAAGCATACTTTAAAG
ATATGGACGGTAGTAAAAAAAATGCTACTTGACACAGGGTCAATTTCCAGAGCAATGCCT
ATTGTCGGTAATATAGACTTTCTGCCTTCAATGTGGGATCCCACCTTTAAGACATGGGCC
ACTAAAGGCCTTATAACTCTTAACCAGTTGTTCAATGGAACAGAACTTAAGTCCTTTTCA
CAGCTTCAAGGACAATTTGGACTTCTGCCGAATGATTTTTATAAATATCTACAAATCAGG
CATTACATCATGAAGCACAAAGAGCGAGACAGAATCAATAAAACCCCAAACTGCATAGAA
CAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
WNISNLNQVLLKXEAARMNVLPRLL-LFQSLPVNIPVSTFNVLNKMITQFIWQRKRPRIRLKTLFLPKNKGGLALPNLKFYYWAAQLTAIVAWIREDEEV
W.I..L...L...EA.RMNVLPRLL.LFQSLPVNIPVSTFNVLNKMITQFIWQRKRPRIRLKTLFLPKNKGGLALPNLKFYYWAAQLTAIVAWIREDEEV
Retrocopy
WEILPLS-LLGRVEAVRMNVLPRLLFLFQSLPVNIPVSTFNVLNKMITQFIWQRKRPRIRLKTLFLPKNKGGLALPNLKFYYWAAQLTAIVAWIREDEEV


Parental protein
KWFKVEQGETKGVRLSTLPFTDLKSVNKIKIGNNWIKHTLEIWTVVKKMLLDTGSISRAMPIVGNIDFPPSMWDPTFKTWATKGLITLNQLFDGTELKSN
KWFKVEQGETKG..LSTLPFTDLKSVNKIKIGNNWIKHTL.IWTV....LLDTGSISRAMPIVGNIDF.PSMWDPTFKTWATKGLITLNQLF.GTELKS.
Retrocopy
KWFKVEQGETKGLWLSTLPFTDLKSVNKIKIGNNWIKHTLKIWTVXXXXLLDTGSISRAMPIVGNIDFLPSMWDPTFKTWATKGLITLNQLFNGTELKS-


Parental protein
FSQLQRQFGLLPNDFYTYLQIRHYIMKHKERDRINKTPNCIEQ
FSQLQ.QFGLLPNDFY.YLQIRHYIMKHKERDRINKTPNCIEQ
Retrocopy
FSQLQGQFGLLPNDFYKYLQIRHYIMKHKERDRINKTPNCIEQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide