RetrogeneDB ID:
retro_olat_58
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold690:45936-46320 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
87.5 %
Coverage:
69.02 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_58
GTCCTCCAACAGCAATGGATGACTGAAGGGGAGGGTCTCTGCAACCAGCAAAGGAACTTC
AGAGTGAAACAGGAGGAACCAGAACCTCCACAGATTAAAGAGGAACCAGGGGAGCTCTTT
ATCAGTCAGGATGAAGATCAGCTTGATTTGAAGCAGGAGACTGATACCTTGATGGAGATT
CCTACTTATGAGGAAGATGAGAACAGTGAAGCAGATCTAAACAATCAGCACAGCTTTAAT
GTAACCAATAGTCAGGATGAAAAAGGAAACCAACATGAAGAAGAATCAACATCAAATACA
GATGAAGAGACAGACCCACAGAATAGAGATCAGAGGAAGAGAAGAGACAGAAGACATGTC
CAAAGTGTGGACCGCTCTCACATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VLPQHWMTEEEDLCNQQRNFRVEQEEPEPPQIKEEPEELCISQDEDHLHLKQETDTLMEIPTYEEDENSEADLNNQQSFNVTDSQDEEGNQH-EESTSTT
VL.Q.WMTE.E.LCNQQRNFRV.QEEPEPPQIKEEP.EL.ISQDED.L.LKQETDTLMEIPTYEEDENSEADLNNQ.SFNVT.SQDE.GNQH.EESTS.T
Retrocopy
VLQQQWMTEGEGLCNQQRNFRVKQEEPEPPQIKEEPGELFISQDEDQLDLKQETDTLMEIPTYEEDENSEADLNNQHSFNVTNSQDEKGNQHEEESTSNT


Parental protein
DEETDPQNRDKRKRRDRRHVQSVDSSHM
DEETDPQNRD.RKRRDRRHVQSVD.SHM
Retrocopy
DEETDPQNRDQRKRRDRRHVQSVDRSHM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide