RetrogeneDB ID:
retro_olat_6
Organism:
Medaka ( Oryzias_latipes )
Location:
7:17099101-17100166 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.73 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RHO (2 of 2)
Parental gene aliases:
No gene alias available
Parental gene description:
rhodopsin [Source:HGNC Symbol;Acc:10012]

Genomic region (view in browser)





>retro_olat_6
ATGAATGGCACAGAGGGACCATATTTTTATGTCCCTATGGTGAACACCACCGGCATTGTC
CGGAGTCCTTATGAATATCCTCAGTATTACCTTGTCAGCCCAGCAGCCTATGCTGCTCTG
GGTGCCTACATGTTTTTTCTCATCCTGGTTGGCTTCCCCATCAACTTCCTCACTCTCTAC
GTCACCCTCGAACACAAGAAGCTGCGAACCCCTCTAAACTACATCCTGCTAAACCTCGCG
GTGGCCGACCTCTTCATGGTGTTCGGAGGATTCACTACAACGATGTACACCTCCATGCAC
GGCTACTTTGTCCTTGGACGTCTCGGCTGCAATCTGGAAGGATTCTTTGCTACCCTTGGT
GGTGAAATTGGTCTCTGGTCACTGGTTGTTCTGGCTATTGAGAGATGGGTGGTTGTCTGC
AAGCCCATCAGCAACTTCCGCTTTGGTGAGAATCATGCTATTATGGGTTTGGTCTTCACC
TGGATCATGGCTGCCTCCTGTGCCGTGCCCCCTCTCGTCGGCTGGTCTCGTTACATCCCA
GAGGGCATGCAGTGCTCATGTGGAGTCGACTACTACACCCGTGCAGAGGGCTTCAACAAC
GAGTCCTTTGTTGTCTACATGTTCGTCTGCCACTTCCTAATTCCACTGATCGTTGTGTTC
TTCTGCTACGGCCGTCTGCTCTGCGCTGTCAAGGAGGCTGCTGCTGCCCAGCAGGAGTCT
GAGACCACCCAGAGAGCTGAGAGGGAAGTCACCCGCATGGTTGTCATCATGGTCATCGGC
TTCCTGGTATGTTGGCTTCCCTATGCCAGTGTGGCCTGGTACATCTTCACAAATCAGGGC
TCTGAATTCGGGCCACTCTTCATGACCATCCCAGCCTTCTTTGCCAAGAGTTCTTCCATC
TACAACCCAGCAATCTACATCTGCATGAACAAGCAGTTCCGCAACTGCATGATCACCACC
CTGTGCTGTGGGAAGAATCCCTTTGAAGAGGAGGAGGGAGCCTCCACTACTGCTTCCAAG
ACCGAGGCCTCATCTGTCTCCTCAAGCTCTGTGTCCCCTGCATAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MNGTEGPDFYVPMSNRTGLVRSPFEYPQYYLAEPWKYSLLAAYMLFLIITAFPINFLTLHVTVKHKKLRNPLNYVLLNLAVADLFMIVGGFTVTLYTALH
MNGTEGP.FYVPM.N.TG.VRSP.EYPQYYL..P..Y..L.AYM.FLI...FPINFLTL.VT..HKKLR.PLNY.LLNLAVADLFM..GGFT.T.YT..H
Retrocopy
MNGTEGPYFYVPMVNTTGIVRSPYEYPQYYLVSPAAYAALGAYMFFLILVGFPINFLTLYVTLEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMH


Parental protein
GYFILGVTGCNVEGFFATLGGEIALWSLVVLAIERYVVVCKPMTNFRFEEKHAIAGLAFSWVMALTCAAPPLFGWSRYIPEGMQCSCGIDYYTPKPEINN
GYF.LG..GCN.EGFFATLGGEI.LWSLVVLAIER.VVVCKP..NFRF.E.HAI.GL.F.W.MA..CA.PPL.GWSRYIPEGMQCSCG.DYYT.....NN
Retrocopy
GYFVLGRLGCNLEGFFATLGGEIGLWSLVVLAIERWVVVCKPISNFRFGENHAIMGLVFTWIMAASCAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNN


Parental protein
TSFVIYMFVLHFSIPLFIIFFCYSRLLCTVRAAAALQQESETTQRAEREVTRMVIVMVISFLVCWVPYATVAWYIFANQGTEFGPVFMTVPAFFAKSAAL
.SFV.YMFV.HF.IPL...FFCY.RLLC.V..AAA.QQESETTQRAEREVTRMV..MVI.FLVCW.PYA.VAWYIF.NQG.EFGP.FMT.PAFFAKS...
Retrocopy
ESFVVYMFVCHFLIPLIVVFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVVIMVIGFLVCWLPYASVAWYIFTNQGSEFGPLFMTIPAFFAKSSSI


Parental protein
YNPVIYILLNRQFRNCMITTVCCGKNPFGEDDAGA--VSKTQTSSVSSSQVAPA
YNP.IYI..N.QFRNCMITT.CCGKNPF.E........SKT..SSVSSS.V.PA
Retrocopy
YNPAIYICMNKQFRNCMITTLCCGKNPFEEEEGASTTASKTEASSVSSSSVSPA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide