RetrogeneDB ID:
retro_olat_60
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold717:109949-110330 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
91.34 %
Coverage:
69.02 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_60
GTTCTCCCCCAACATTGGAAGACTGAAGAAGAAGATCTCTGCAACCAGCAGAGGAACTTC
AGAGCGGAACAGGAGGAACCAGAACATCCGTGGATTAAAAAGGAACCAAAGGAACTCTGC
ATCAGTCAGGTTGAAGATCAGCTTGATCTGAAGCAGGAGACTGATACCTTGATGGAGATT
CCTACTAATGAGGAAGATGAGAACAGTGAAGCAGATCTAAACAACCAGCAGAGCTTTAAT
GTAACTGATAGTCAGGATGAAGAAGGGAACCAACATGAAGAATCAACATCAACTACAGAT
GAAGAGACAGACCCACAGAACAGAGATCAGAGGAAGAGGAGGGACAGAAGACATGTCCAA
AGTGTGGACAGCTCTCACATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VLPQHWMTEEEDLCNQQRNFRVEQEEPEPPQIKEEPEELCISQDEDHLHLKQETDTLMEIPTYEEDENSEADLNNQQSFNVTDSQDEEGNQHEESTSTTD
VLPQHW.TEEEDLCNQQRNFR.EQEEPE.P.IK.EP.ELCISQ.ED.L.LKQETDTLMEIPT.EEDENSEADLNNQQSFNVTDSQDEEGNQHEESTSTTD
Retrocopy
VLPQHWKTEEEDLCNQQRNFRAEQEEPEHPWIKKEPKELCISQVEDQLDLKQETDTLMEIPTNEEDENSEADLNNQQSFNVTDSQDEEGNQHEESTSTTD


Parental protein
EETDPQNRDKRKRRDRRHVQSVDSSHM
EETDPQNRD.RKRRDRRHVQSVDSSHM
Retrocopy
EETDPQNRDQRKRRDRRHVQSVDSSHM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide