RetrogeneDB ID:
retro_olat_61
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold764:43413-43902 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.12 %
Coverage:
55.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_61
GTGTTCCTGATCTGCCTGTGCTGGGGCTGCTCCGCCCTCTACAACGGCTGCATTCTGATG
GGACAGCGGCCGCACAGGGTCCACAGCTGCCACGGCGAGTGCGTGGTGGTCATCAGCCAC
ACATCAGGAAGTGTCCACCTGTTCCTCTGGTTAGTCGGCCCCTGCTCTGTCATGCTGGTG
CTGTACGCCCGGGTGTTGGTGGCGGCCGTGTCTCAGGTCTGGCGCCTGCAGACGGTCCCT
TCTGTTCCCACGGTGAAGAGGTCGGAGTGGAAAGCAGCCCGGACCCTGGGCATGGTGATG
GCAGTGTTTCTCATGTGCTTCTGCCCGTACTACTACCCTTCCCTGGCAGGCCAAGACCCC
CCCACAAAGCCGTGGTATTATGCCATCTTATCTTGGGTCATGCTGCTGAACTCCTGCATG
AATCCCCTCATCTATGCCTTGTTCTATCCCTGCTTCAGGAAGACCACCAGACTGATCTTC
ACCCTTAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VFLICLCWGCSTLYNDCILMGHLQRPHRVHSCHGECVVVISHTSGTVHLFFWLVGPRSVMLVLYARVLVAAVSQVWRLQTVPSVPTVKRWEWKAARTLGM
VFLICLCWGCS.LYN.CILMG..QRPHRVHSCHGECVVVISHTSG.VHLF.WLVGP.SVMLVLYARVLVAAVSQVWRLQTVPSVPTVKR.EWKAARTLGM
Retrocopy
VFLICLCWGCSALYNGCILMG--QRPHRVHSCHGECVVVISHTSGSVHLFLWLVGPCSVMLVLYARVLVAAVSQVWRLQTVPSVPTVKRSEWKAARTLGM


Parental protein
VMAVFLMCFCPYYYPSLAGQDPPTKLWMFCLLSWVMLLNSCMNPLIYALFYPCFRKTTRLIFTLK
VMAVFLMCFCPYYYPSLAGQDPPTK.W....LSWVMLLNSCMNPLIYALFYPCFRKTTRLIFTLK
Retrocopy
VMAVFLMCFCPYYYPSLAGQDPPTKPWYYAILSWVMLLNSCMNPLIYALFYPCFRKTTRLIFTLK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide