RetrogeneDB ID:
retro_olat_63
Organism:
Medaka ( Oryzias_latipes )
Location:
scaffold878:1611-2028 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.29 %
Coverage:
75.54 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_63
ATAGTATTTAAAAGGACCTGTTCTTGTGTTTCTGCAGCTCTCCCCCAGTGTTGGATGACT
GAAGAGGAAGATCTCTGCATCCAGCAGAGGAACTTCAGAGTGGAACATGAAGAAGCAGAA
CCTCCACAGATTAAAGAGGAACCAGGGGAACTGTGCATAAGTCAGGATGAAGAGCAGATT
GATCTGAAGCAGGAGACTGATACCTTGATGGAGATTCCTACTTATGAGGAAGATGAGAAG
AGTGAAGCAGATCTAAACAATCAGCAGAGCTTTAATGTAACTGATAGTCAGGATGAAGAA
AGAAACCAACATGAAGAATCAACATCAACTACAGATGGAGAGACAGACCCACAGAACAGA
GATCAGAGGAAGAGAAGACACAGAAGACATGTCCAAAGTGTGGACAGCTCTCACATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VIWKPQLQLHHIVLPQHWMTEEEDLCNQQRNFRVEQEEPEPPQIKEEPEELCISQDEDHLHLKQETDTLMEIPTYEEDENSEADLNNQQSFNVTDSQDEE
...K.........LPQ.WMTEEEDLC.QQRNFRVE.EE.EPPQIKEEP.ELCISQDE....LKQETDTLMEIPTYEEDE.SEADLNNQQSFNVTDSQDEE
Retrocopy
IVFKRTCSCVSAALPQCWMTEEEDLCIQQRNFRVEHEEAEPPQIKEEPGELCISQDEEQIDLKQETDTLMEIPTYEEDEKSEADLNNQQSFNVTDSQDEE


Parental protein
GNQHEESTSTTDEETDPQNRDKRKRRDRRHVQSVDSSHM
.NQHEESTSTTD.ETDPQNRD.RKRR.RRHVQSVDSSHM
Retrocopy
RNQHEESTSTTDGETDPQNRDQRKRRHRRHVQSVDSSHM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide