RetrogeneDB ID:
retro_olat_7
Organism:
Medaka ( Oryzias_latipes )
Location:
22:2925749-2926154 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.18 %
Coverage:
98.51 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
OLA.17881
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_olat_7
ATGGCTGAAAAGTTTGTTGGAACTTGGAAAATGATTTCCAGCGAGAACTTTGACGACTAC
ATGAAGGCAATTGGTGTAGGATTTGCAACTCGGCAGGTGGGAAACCGCACCAAACCCAAC
CTCGTGGTGAGCATCGAGGACCAGGGCACCATCTCCATGAAGTCCCAGAGCACCTTCAAA
ACCACCGAGGTCAAGTTCAAGCTCAACGAGCCCTTCGAGGAGACCACCGCGGACGACAGG
AAGACCACGACCGTGATCACGCTGGACAACGGCAAGCTTGTGCAGAAACAGAGCTGGGAC
GGGAAGGAGACGAGTATTGAGAGGGAGATCTCTGATGGAAAATTGATAGCGAAATGCATT
ATGGGAGATGTGGTGGCGGTGAGGACGTATGTCAAGGAGGCATGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVEQFAGTWTLASSENFDEYMKAVGMGFATRQMGNITKPNLVIQVGADGLISMKAESTFKTTEIKFRLGEEFDETTVDGRNVKSTFTLDNGKLVQKQNWD
M.E.F.GTW...SSENFD.YMKA.G.GFATRQ.GN.TKPNLV......G.ISMK..STFKTTE.KF.L.E.F.ETT.D.R......TLDNGKLVQKQ.WD
Retrocopy
MAEKFVGTWKMISSENFDDYMKAIGVGFATRQVGNRTKPNLVVSIEDQGTISMKSQSTFKTTEVKFKLNEPFEETTADDRKTTTVITLDNGKLVQKQSWD


Parental protein
GKTSTLEREIQEGKLIAKCIMDDVVAVRTYEK
GK....EREI..GKLIAKCIM.DVVAVRTY.K
Retrocopy
GKETSIEREISDGKLIAKCIMGDVVAVRTYVK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide