RetrogeneDB ID:
retro_opri_100
Organism:
Location:
GeneScaffold_2247:67068-67563 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
99.39 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL12
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L12 [Source:HGNC Symbol;Acc:10302]

Genomic region (view in browser)





>retro_opri_100
ATGCCACCCAAGTTCGACCCTAACGAGATTAAAGTCGTGTACCTGCGGTGCACCGGCGGC
GAGGTGGGTGCCACGTCTGCCCTGGCCCCCAAGATCGGCCCCCTGGGCCTGTCTCCAAAG
AAGGTGGGAGATGACATTGCCAAGGCCACCGGGGACTGGAAGGGCCTGCGGATCACGGTG
AAGCTGACCATCCAGAACCGACAAGCGCAGATCGAGGTGGTGCCGTCGGCCTCTGCCCTG
ATCATCAAGGCCCTCAAGGAGCCGCCCAGGGACCGCAAGAAGCAGAAGAACATCAAACAC
AGCGGGAACATCACATTTGATGAAATTGTCAACATCGCCCGGCAGATGCGCCACCGATCC
TTAGCCAGAGAACTTTCCGGAACCATCAAAGAGATTCTGGGGACTGCCCAGTCGGTGGGC
TGCAATGTGGATGGCCGCCACCCACACGACATCATAGATGACATCAACAGTGGTGCAGTG
GAATGCCCAGCTAGC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALII-ALKEPPRDRKKQKNIKH
MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALII.ALKEPPRDRKKQKNIKH
Retrocopy
MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKH


Parental protein
SGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS
SGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS
Retrocopy
SGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide