RetrogeneDB ID:
retro_opri_1001
Organism:
Location:
scaffold_5497:56866-57475 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.58 %
Coverage:
74.36 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PABPN1L
Parental gene aliases:
No gene alias available
Parental gene description:
poly(A) binding protein, nuclear 1-like (cytoplasmic) [Source:HGNC Symbol;Acc:37237]

Genomic region (view in browser)





>retro_opri_1001
ATGTGGCCCTTTCTGAGCCGCAAGCTCTTCCCGCCGCCCTCTGAAACCTGGCTCCAGGTA
GTCTCCTCGGACCCCAAGGCTCAGGGCTGGGGGGCCTGGGGCAGGACTGAGAAGACCCCA
GTGGGGGCTGACGCTGGGCACGGGAAGGAGCAGGAGGAGGACACGGAGGACGATGCCGGC
CTGCTGCTGGCCCTGCTGGAGCCGGAACACCTGGCCCAGTGCCCGGTGCCTGACCAGGAG
CTGGAGGCCATCCAGCTAAAGCTGTGGGCCATGGAGCAGGCTGAGGAGGCGCCAGAGGCA
CCCGGAGCCAGAGGCGAGGCTGGCCAGGAGGAGGATACACAGGCCAGCCAGCTGCTCAGC
TCCGAGACCTCCGGCTGCTCCTTACCCAGGACCCCCAAGGACAAAGTGGAGGCTGACCAC
AGGTCCATCTACATGGGCAATGTGGACTCTGGGGGTACTGCCGAGGAGCTGGAGGCCTAC
TTCAACCACTGCGGCGAGATCCAGCGTGTCACCATCCTGTGCGACAAGTTCTCCAGACAC
CCCAAGGGCTACGGCTACATAGAGTTTGCCAGCGAGCGTTCTGCCCAGGCTGCCGTGGGG
CTGGACGCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MWPFLSRKLFPPPSETWLQVVSSDPKAQGWGAWGRTEKTPLGADAGHRKEQEEDTEDDAGLLLALLEPEHLAQCPVPDQELEAIKLKLWAMEQAEEAPQA
MWPFLSRKLFPPPSETWLQVVSSDPKAQGWGAWGRTEKTP.GADAGH.KEQEEDTEDDAGLLLALLEPEHLAQCPVPDQELEAI.LKLWAMEQAEEAP.A
Retrocopy
MWPFLSRKLFPPPSETWLQVVSSDPKAQGWGAWGRTEKTPVGADAGHGKEQEEDTEDDAGLLLALLEPEHLAQCPVPDQELEAIQLKLWAMEQAEEAPEA


Parental protein
PRAGGEAGQEEDTQASQLLSSETSGCSLPETPKDKVEADHRSIYVGNVDYGGTAEELEAYFNHCGEIQRVTILCDKFSGHPKGYAYIEFASERSAQAAVG
P.A.GEAGQEEDTQASQLLSSETSGCSLP.TPKDKVEADHRSIY.GNVD.GGTAEELEAYFNHCGEIQRVTILCDKFS.HPKGY.YIEFASERSAQAAVG
Retrocopy
PGARGEAGQEEDTQASQLLSSETSGCSLPRTPKDKVEADHRSIYMGNVDSGGTAEELEAYFNHCGEIQRVTILCDKFSRHPKGYGYIEFASERSAQAAVG


Parental protein
LDA
LDA
Retrocopy
LDA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide