RetrogeneDB ID:
retro_opri_1006
Organism:
Location:
scaffold_56401:1811-2207 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.97 %
Coverage:
98.51 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PFDN4
Parental gene aliases:
No gene alias available
Parental gene description:
prefoldin subunit 4 [Source:HGNC Symbol;Acc:8868]

Genomic region (view in browser)





>retro_opri_1006
GCCACCATGAAGAAGGCGGCTGCAGAAGATGTCAATGTTACTTTTGAAGATCAACAAAAG
ATAAATAAATTTGCACGGAATACGAGTAGAATCACAGAGCTAAAAGAAGAAATAGAAGTA
AAAAAGAAACAACTCCAGAATTTAGAGGATGCTTGTGATGATATCATGCTTGCAGATGAC
GACTGCTTGATGATTCCTTATCAAATTGGTGATGTTTTCATTAGCCACTCACAAGAAGAA
ACACAGGAAATGTTAGAAGAGGCAAAGAAAAATTTGCAAGAAGAAACTGACACCTTAGAA
TCCAGAGTGGAATCAATTCAATGGGTGTTAGCAGATTTGAAAGTTCAATTATATGCAAAA
TTTGGGAGCAACATAAACCTTGAAGGTGACGAAAGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ATMKKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALE
ATMKKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEE.D.LE
Retrocopy
ATMKKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEETDTLE


Parental protein
SRVESIQRVLADLKVQLYAKFGSNINLEADES
SRVESIQ.VLADLKVQLYAKFGSNINLE.DES
Retrocopy
SRVESIQWVLADLKVQLYAKFGSNINLEGDES


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide