RetrogeneDB ID:
retro_opri_1041
Organism:
Location:
scaffold_61300:1299-1584 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
100.0 %
Coverage:
67.86 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
MRPS18C
Parental gene aliases:
No gene alias available
Parental gene description:
mitochondrial ribosomal protein S18C [Source:HGNC Symbol;Acc:16633]

Genomic region (view in browser)





>retro_opri_1041
ATGGCCGCTATAGTTGCTGTCTGTAGGGTCCTGGGAAGGAAGAAGTTGACGCTGGGAACG
GCAGCTGTCGGCCTCCCAGATCCCGGAGCTCATGCTGTACTGTGGAGAAGAGGTTGTTCA
CAATTAACCAGCAATGAGGACCTGCCTGTTCCAATGGAAAATCCTTTTAAGGAGCCTCTT
AAGAAATGTATCTTGTGTGAGAAACGTGTAGATTATAAGAATGTTCAGCTTTTGTCCCAG
TTTGTTTCTCCATTTACTGGATGCATTTATGGAAGGCACATAACA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAAIVAVCRVLGRKKLTLGTAAVGLPDPGAHAVLWRRGCSQLTSNEDLPVPMENPFKEPLKKCILCEKRVDYKNVQLLSQFVSPFTGCIYGRHIT
MAAIVAVCRVLGRKKLTLGTAAVGLPDPGAHAVLWRRGCSQLTSNEDLPVPMENPFKEPLKKCILCEKRVDYKNVQLLSQFVSPFTGCIYGRHIT
Retrocopy
MAAIVAVCRVLGRKKLTLGTAAVGLPDPGAHAVLWRRGCSQLTSNEDLPVPMENPFKEPLKKCILCEKRVDYKNVQLLSQFVSPFTGCIYGRHIT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide