RetrogeneDB ID:
retro_opri_1047
Organism:
Location:
scaffold_61997:121-523 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.3 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RSL24D1
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal L24 domain containing 1 [Source:HGNC Symbol;Acc:18479]

Genomic region (view in browser)





>retro_opri_1047
GTGTTTAGATTCTGTAAATCCAAATGTCATAAAAACTTTAAAAAGAAGCGTAATCCTCGC
AAGGTCAGGTGGGCCAAAGCATTCCGGAAAGCAGCCGGCAAGGAACTGACAGTGGATAAT
TCATTTGAATTTGAAAAACGAAGAAATGAACCTATCAAATACCAGAGAGAGTTGTGGAAT
AAAACTATTGATGCAATGAAGAGAGTTGAAGAGATAAAGCAGAAAAGCCAAGCTAAATTT
ATAATGAACAGATTGAAGAAAAATAAAGAACTACAGAAAGTTCAGGACATCAAAGAAGTC
AAGCAGAATATTCACCTCATCCGGGCTCCTGTTGCAGGCAAACAGCTGGAAGAAAAAATG
GTACAGCAGTTACAAGAAGATGTGGACATGGAGGATACTTCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEV
VFRFCKSKCHKNFKKKRNPRKVRW.KAFRKAAGKELTVDNSFEFEKRRNEP.KYQRELWNKTIDAMKRVEEIKQK.QAKFIMNRLKKNKELQKVQDIKEV
Retrocopy
VFRFCKSKCHKNFKKKRNPRKVRWAKAFRKAAGKELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKSQAKFIMNRLKKNKELQKVQDIKEV


Parental protein
KQNIHLIRAPVAKGKQLEDKMVQQLQEDVDMEDTS
KQNIHLIRAPVA.GKQLE.KMVQQLQEDVDMEDTS
Retrocopy
KQNIHLIRAPVA-GKQLEEKMVQQLQEDVDMEDTS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide