RetrogeneDB ID:
retro_opri_1056
Organism:
Location:
scaffold_63187:1443-1766 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.57 %
Coverage:
71.43 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS27A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S27a [Source:HGNC Symbol;Acc:10417]

Genomic region (view in browser)





>retro_opri_1056
GGACAAACTTTATCTGACTATAACATTCTCAAAGACTTAATCATTTTGAAACAGTCCATG
CTACATCTTGTGTTAAGACTTTGTGGTGCCAAGAAAATGAAGAAGTCTTACACCACTCCC
GCAAAGAACAAGCATAAGGGAAATAAGGTTAAGCTGGCTGTCCTAAAGTACTCTAAGGTG
GACAAGAATGGTATAACCGCTGCCTGTGTCACAAGTGCCCTTCTGATGAATGCGGTGCTG
GAGTGTTCATGGCCAGCCATTCTGACAGGCATTACTGTAGCAAGTGTTGCCTGATTTACT
GCTTCATCAAACCAGACGACAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISR-LRRECPSDECGAGVFMASHFDRHYCGKCC
G..L.D...L.D..I.K.S.LHLVLRL.G...K..KKSYTTP.KNKHK..KVKLAVLKY.KVD.NG.....L...CPSDECGAGVFMASH.DRHYC.KCC
Retrocopy
GQTLSDYNILKDLIILKQSMLHLVLRLCGA--KKMKKSYTTPAKNKHKGNKVKLAVLKYSKVDKNGITAA/LCHKCPSDECGAGVFMASHSDRHYCSKCC


Parental protein
LTYCFNKPEDK
L.YCF.KP.DK
Retrocopy
LIYCFIKPDDK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide