RetrogeneDB ID:
retro_opri_1074
Organism:
Location:
scaffold_6627:88984-89431 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
87.42 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS14
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S14 [Source:HGNC Symbol;Acc:10387]

Genomic region (view in browser)





>retro_opri_1074
ATGGCACATCGCAAGCCGAAGGAGAAGGAGCAGTTCGTCAGCCTCAGGCCTCAGGTGGCC
GAAGGCGACAATGTCTTCGGGGTCTGCCACATCTTTGCGTCCTTCAATGACACCTTTGTC
CACGTTGCTGATGATTCTGGCAAGGAGACCATCTGCCGTGTGACTGGTGGAATGAAGGTG
AAGGCTGATCGAGATGAGTCCTCGCCATACGCTGCCGTGTTGGCTGCCCAGGATGCAGCC
CAGAGGTGCAAAGAGCTGGGCATCACTGCCCTCCACGTCAAACTGCGGGCCACAGGGGGA
GATAGGACCGAAACCCCTGGACCTGGAGCTCAGTCAGCTCTCATAGCCCTTGCTCGCTCA
GGGATGAAAATCGGGCGAATTGAAGATGTCACCCCCATCCCTTCCGACAGCACCCACAGG
AAGGGGAGTCGCCATGGTCGCCGCCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHLKLRAT
MA.RK.KEK..EQ..SL.PQVAEG.NVFGVCHIFASFNDTFVHV.D.SGKETICRVTGGMKVKADRDESSPYAA.LAAQD.AQRCKELGITALH.KLRAT
Retrocopy
MAHRKPKEK--EQFVSLRPQVAEGDNVFGVCHIFASFNDTFVHVADDSGKETICRVTGGMKVKADRDESSPYAAVLAAQDAAQRCKELGITALHVKLRAT


Parental protein
GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL
GG.RT.TPGPGAQSAL.ALARSGMKIGRIEDVTPIPSDST.RKG.R.GRRL
Retrocopy
GGDRTETPGPGAQSALIALARSGMKIGRIEDVTPIPSDSTHRKGSRHGRRL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide