RetrogeneDB ID:
retro_opri_1086
Organism:
Location:
scaffold_68551:2-1283 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.02 %
Coverage:
59.22 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
GAB1
Parental gene aliases:
No gene alias available
Parental gene description:
GRB2-associated binding protein 1 [Source:HGNC Symbol;Acc:4066]

Genomic region (view in browser)





>retro_opri_1086
CTACACACCCAGGCATGGAAGAGAAGGTGGTTCGTGTTACGCAGTGGCCGTTTAACTGGA
GATCCTGATGTGTTGGAATATTACAAAAATGATCATGCCAAGAAGCCAATTCGTATTATT
GATTTAAATTTATGTCAGCAAGTTGATGCTGGATTGACATTTAATAAGAAAGAGTTTGAA
AACCGCTACATTTTTTATATCAACACTATTGACCGGATTTTCTACTTGGTAGCAGACAGT
GAGGAGGAAATGAATAAGTGGGTTCGTTGCATTTGTGACATCTGTGGGTTTAATCCTACA
GAAGAAGATCCTGTGAAGCTGCCTGGTAGCTCCTTGCAAGCACAAGCTCATTTGCCCTTA
GCTATAAACACAGCACCACCATCCTCCCAGATGGACTCCTCCACTCTACCTCCTTCCTAT
CAGCTCATCAGCCTTCCGCCACCACATGCAGAAACTCTTGGCATCCAGGAGGATCCCCAA
GACTACCTCTTGCTAATCAACTGTCAAAGCAAGAAGCCTGAACCCACCAGAACACATGCC
GACTCTGCAAAATCCACCTCTTCTGAAACAGACTGTAATGATAACATCCCTTATCACAAA
AATCCACCCTCCTCCCAGAGCAAACAGGGAGTGAATGGCTTTTTCCAGCAGCAAATGCTG
TATGACTCTCCCCCATCACGGGCTGCCTCTGTGTCCATAGACCCCAACCTTTACAACCTG
CCCAGGAGTTACTCTCATGATGTGCTACCAAAGGCATCTCCCTCAAGTACTGAAACAGAT
GGAGAACTCTATGTTTTTAATACCCCAACTGGGACATCAAGTATAGAGGCTCAAATGAGG
CATGACTCCATCAGCTATGACATTCCTCCAACACCCGGTAGTACTTACCAGGTTCCACGA
ACATTTCCTGATGGCACCTTGGGACAGACATCCAAGCTAGACACTATTCTTGATATCCCA
CCATCTCGGCCACCGAAGCCGCATCCAGCTCACGACAGATTTCCCGTGGAAATGTCTGGG
CTCCCACGCACGACTTCCGACACCGACAGTAGCTACTGCATCCCTACAGCAGGGGTGCTG
CCATCACGTAGTAATACCATTTCCACTGTGGAGCTGAACAAATTGCGAAAAGATGCTAGT
TCTCAAGACTGCTATGATGTTCCACGAACATTTCCAAGTGATAGATCTAGCTCACTTGAA
GGCTTCCATAATCACTTTAAAATCAAAAATGTGTTGACAGTGGGAAGTGTATCAAGTGAA
GAACTGGATGAAAATTACGTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LKRYAWKRRWFVLRSGRLTGDPDVLEYYKNDHAKKPIRIIDLNLCQQVDAGLTFNKKEFENRYIFYINTIDRIFYLVADSEEEMNKWVRCICDICGFNPT
L...AWKRRWFVLRSGRLTGDPDVLEYYKNDHAKKPIRIIDLNLCQQVDAGLTFNKKEFENRYIFYINTIDRIFYLVADSEEEMNKWVRCICDICGFNPT
Retrocopy
LHTQAWKRRWFVLRSGRLTGDPDVLEYYKNDHAKKPIRIIDLNLCQQVDAGLTFNKKEFENRYIFYINTIDRIFYLVADSEEEMNKWVRCICDICGFNPT


Parental protein
EEDPVKPPGSSLQAQADLPLAINTAPPSSQMDSSALPPSYQLISLPPPHAETLGIQEDPQDYLLLINCQSKKPEPTRTHADSAKSTSSETDCNDNVPSHK
EEDPVK.PGSSLQAQA.LPLAINTAPPSSQMDSS.LPPSYQLISLPPPHAETLGIQEDPQDYLLLINCQSKKPEPTRTHADSAKSTSSETDCNDN.P.HK
Retrocopy
EEDPVKLPGSSLQAQAHLPLAINTAPPSSQMDSSTLPPSYQLISLPPPHAETLGIQEDPQDYLLLINCQSKKPEPTRTHADSAKSTSSETDCNDNIPYHK


Parental protein
NPPSSQSKHGVNGFFQQQMLYDSPPSRAASVSIDPNLYNLPRSYSHDVLPKASPSSTETDGELYVFNTPSGTSSIEAQMRHVSISYDIPPTPGSTYQVPR
NPPSSQSK.GVNGFFQQQMLYDSPPSRAASVSIDPNLYNLPRSYSHDVLPKASPSSTETDGELYVFNTP.GTSSIEAQMRH.SISYDIPPTPGSTYQVPR
Retrocopy
NPPSSQSKQGVNGFFQQQMLYDSPPSRAASVSIDPNLYNLPRSYSHDVLPKASPSSTETDGELYVFNTPTGTSSIEAQMRHDSISYDIPPTPGSTYQVPR


Parental protein
TFPDGTLGQTSKLDTIPDIPPPRPPKPHPAHDRSPVETSGLPRTTSDTDSSYCIPTAGVPPSRSNTISTVELNKLRKDASSQDCYDIPRTFPSDRSSSLE
TFPDGTLGQTSKLDTI.DIPP.RPPKPHPAHDR.PVE.SGLPRTTSDTDSSYCIPTAGV.PSRSNTISTVELNKLRKDASSQDCYD.PRTFPSDRSSSLE
Retrocopy
TFPDGTLGQTSKLDTILDIPPSRPPKPHPAHDRFPVEMSGLPRTTSDTDSSYCIPTAGVLPSRSNTISTVELNKLRKDASSQDCYDVPRTFPSDRSSSLE


Parental protein
GFHNHFKIKNVLTVGSVSSEELDENYV
GFHNHFKIKNVLTVGSVSSEELDENYV
Retrocopy
GFHNHFKIKNVLTVGSVSSEELDENYV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide