RetrogeneDB ID:
retro_opri_11
Organism:
Location:
GeneScaffold_1816:134098-135448 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.89 %
Coverage:
92.33 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_opri_11
ATGATGCTGAGCACGGAAGGCAGGGAGGGGTTCGTGGTGAAGGTCAGGGGCCTACCCTGG
TCCTGCTCAGCTGATGAAGTTATGCGCTTCTTCTCTGATTGCAAAATCCAGAACGGCACA
TCAGGTATTCGTTTCATCTACACCAGAGAAGGCAGACCAAGTGGAGAAGCATTTGTTGAA
CTCGAATCCGAAGACGAAGTGAAACTGGCTTTGAAGAAGGACAGAGAAACCATGGGACAC
AGATATGTTGAAGTGTTCAAGTCCAACAGTGTTGAAATGGATTGGGTGTTGAAGCATACA
GGTCCGAATAGTCCTGATACTGCCAACGATGGCTTCGTCCGGCTTAGAGGACTCCCATTT
GGCTGTAGCAAGGAAGAGATTGTTCAGTTCTTTTCAGGGTTGGAAATTGTGCCAAATGGG
ATGACACTGCCGGTGGACTTTCAGGGGCGGAGCACAGGGGAGGCGTTTGTGCAGTTTGCC
TCACAGGAGATAGCTGAAAAAGCCTTAAAGAAACACAAGGAAAGAATAGGACACAGGTAC
ATTGAAATCTTCAAGAGTAGCCGAGCTGAAGTCCGAACCCATTATGATCCCCCTCGGAAG
CTCATGGCCATGCAGCGGCCAGGTCCCTATGACAGGCCAGGGGCAGGCAGGGGATATAAT
AGCCTTGGCAGAGGAGCTGGGTTTGAAAGAATGAGGCGGGGTGCCTATGGTGGAGGCTAT
GGAGGTTATGATGACTATGGTGGTTATAATGATGGGTATGGTTTTGGGTCTGATAGATTT
GGGAGAGACCTCAATTACTGTTTCTCAGGAATGTCTGATCATAGATATGGAGATGGTGGG
TCCAGTTTCCAGAGCACCACAGGGCACTGTGTGCACATGAGGGGGTTGCCTTACAGAGCC
ACTGAGAATGATATTTATAATTTTTTCTCACCTCTTAATCCCATGAGAGTCCATATTGAA
ATTGGACCGGATGGCAGGGTTACTGGTGAGGCGGATGTTGAATTTGCTACTCATGAAGAT
GCAGTGGCAGCCATGGCAAAAGATAAAGCTAATATGCAACACAGATATGTGGAGCTCTTC
TTGAATTCTACTGCAGGAACAAGTGGGGGAGCCTATGATCATAGCTATGTAGAACTCTTC
CTGAATTCTACAGCGGGGGCAAGTGGTGGTGCTTATGGTAGCCAAATGATGGGAGGAATG
GGCTTATCCAACCAGTCCAGTTACGGGGGTCCCGCTAGCCAGCAGCTGAGTGGCGGTTAT
GGAGGCGGTTATGGCGGTCAGAGCAGCATGAGTGGATATGATCAAGTTCTGCAGGAAAAC
TCCAGTGACTATCAGTCAAACCTTGCTTAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSLGRGAGFERMRR
LEIVPNG.TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSLGRGAGFERMRR
Retrocopy
LEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSLGRGAGFERMRR


Parental protein
GAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV
GAYGGGYGGYDDY.GYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGS.FQSTTGHCVHMRGLPYRATENDIYNFFSPLNP.RVHIEIGPDGRVTGEADV
Retrocopy
GAYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADV


Parental protein
EFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGY
EFATHEDAVAAM.KDKANMQHRYVELFLNSTAG.SGGAY.H.YVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGY
Retrocopy
EFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGY


Parental protein
GSQGTVNSSYYSS
......NSS.Y.S
Retrocopy
DQVLQENSSDYQS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide