RetrogeneDB ID:
retro_opri_1108
Organism:
Location:
scaffold_7199:23646-24000 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.83 %
Coverage:
96.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL31
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]

Genomic region (view in browser)





>retro_opri_1108
AAGGGCGGCAAGAAGGGCCGTTCTGCCATCAACGAGGTGGTGACGCAGGAGTACGCTGTC
AACAGTCACGAGTGCATCCATGGAGTGGGCTTCAAGAAGCGAGCTCCTCGGGCGCTGAGG
GAGATCCGGAAGATTGCCATGAAAGAAATGGGAACTCCAGATGTGTGCATTGATACGAGG
CTCAACAAAGCTGTGTGGGCCAAAGGAATAAGGAGCGTCCCATCCCGCATCTGCCTGAGA
CTGTCCAGAAAATGTAACGCGGATGAAGATTCGCCAAACAAGCTCTGTCCTCTGGTTACC
TACGTGCCTGTCACGATTTTCAAAAATCTACAGATTGTTAATGTGAATGAGAGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTL
KGG..KKGRSAINEVVT.EY..N.H..IHGVGFKKRAPRAL.EIRK.AMKEMGTPDV.IDTRLNKAVWAKGIR.VP.RI..RLSRK.N.DEDSPNKL..L
Retrocopy
KGG--KKGRSAINEVVTQEYAVNSHECIHGVGFKKRAPRALREIRKIAMKEMGTPDVCIDTRLNKAVWAKGIRSVPSRICLRLSRKCNADEDSPNKLCPL


Parental protein
VTYVPVTTFKNLQTVNVDEN
VTYVPVT.FKNLQ.VNV.E.
Retrocopy
VTYVPVTIFKNLQIVNVNES


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide