RetrogeneDB ID:
retro_opri_1124
Organism:
Location:
scaffold_75119:1468-1885 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
97.12 %
Coverage:
85.19 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_opri_1124
GCTGTCCCTGTACGCGCTGCACCGCGCGCCCGGGACCGGGACTACCGCGCGCTCTGCGAC
GTGGGCTCCGCCATCAGCTGTTCTCGCGTCTTCTCGTCCAGATGGGGCCGGGGCTTCGGG
CTGGTGGAGCAAGTCTTGGGCCAGGATAGCATCCTCAATCAATCCAACAGTATATTCGGT
TGCATTTTCTACACGCTGCAGCTGGCCTTAGGTTGCCTGCGGGCTCGCTGGGCCTCCATC
CTGCTGGTACTGAGCTCGCTGGTGTCGATTGCCGGTTCCGTCTACCTGGCCTGGATCCTG
TTTTTCGTGCTCTATGATTTCTGCATCGTTTGCATCACTACGTATGCCATCAACGTGGGC
CTGATGTTGCTCAGCTTCCGGGAGGTCCCAGAACCCCAGGTCAAGGCCAAGGGCCAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ALHVKAA-RARDRDYRALCDVGSAISCSRVFSSRWGRGFGLVEQVLGQDSILNQSNSIFGCIFYTLQLALGCLRARWASILLVLSSLVSIAGSVYLAWIL
A..V.AA.RARDRDYRALCDVGSAISCSRVFSSRWGRGFGLVEQVLGQDSILNQSNSIFGCIFYTLQLALGCLRARWASILLVLSSLVSIAGSVYLAWIL
Retrocopy
AVPVRAAPRARDRDYRALCDVGSAISCSRVFSSRWGRGFGLVEQVLGQDSILNQSNSIFGCIFYTLQLALGCLRARWASILLVLSSLVSIAGSVYLAWIL


Parental protein
FFVLYDFCIVCITTYAINVGLMLLSFREVPEPQVKAKGH
FFVLYDFCIVCITTYAINVGLMLLSFREVPEPQVKAKGH
Retrocopy
FFVLYDFCIVCITTYAINVGLMLLSFREVPEPQVKAKGH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide