RetrogeneDB ID:
retro_opri_1133
Organism:
Location:
scaffold_77381:2-1079 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.28 %
Coverage:
58.06 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PABPC4
Parental gene aliases:
No gene alias available
Parental gene description:
poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:HGNC Symbol;Acc:8557]

Genomic region (view in browser)





>retro_opri_1133
ATGAACGTGGCAGCCAAGTACCGCATGGCCTCCCTCTATGTGGGCGACCTCCATCCAGAC
GTCACGGAGGACCTGCTGTTCAAGAAGTTCAGCACGGTGGGACCCGTGCTGTCCATTCGC
GTTTGCAGGGACCTGCTGACCCGTCGCTCCCTGGGCTATGCCTACGTGAACTTCCTGCAG
CTGGCTGATGCCCAGAAGGCGCTGGACACAATGAATTTCGATGTAGTGGAAGGTAGGGCC
ATCCGCCTCATGTGGTCCCAACGCGATGCCTACTTAAGGAAATCTGGAATTGGGAATGTC
TTCATCAAAAACCTCGACAAATCCATCGATAACAAAACCCTGTATGAGTGTTTTTCAGCG
TTTGGGAAGATCCTGTCTTCCAAGGTGATGAGCGACGATCAAGGCTCCAAGGGCTACGCG
TTCGTGCACTTTCAGAACCAGATGGCGGCCGACAGGGCCATCGAGGAGATGAACGGCAAG
TTCCTCAAGGACTGCAAGGTGTTTGTGGGCAGATTCAAACACCGCAGAGATAGGGAGGCT
GAGCTGCGAAAGCACGCCAGTGAGTTCACCAACGTGTACATCAAAAACTTCGGGGACGAT
ATGGACGACGAGAGGCTGAGGGACATCTTCAGTAAATATGGCAGGATTGTGAGTGTTAAG
GTGATGACCAATCCCTATGGGAAATCCAGAGGGTTTGGCTTCGTGAGCTTTGACAGCCAC
GAGGCTGCCAAAAGGGCCGTGGAAGACATGAATGGAGAGGCCATCAACGGGCAGCCCCTC
TTCGTAGGTCGGGCGCAGAAGAAAGTAGAGCGACAGGCTGAGTTAAAACAAATGTTTGAA
CAATTGAAAAAGGAAAAGATTCGCGGGCGCCAGGCAGCAAAACTCTATATTAAGAATCTT
GACGGCAGCATCGACGATGAAAAGCTGCGGCAGGAGTTTGCCTGCTTTGGGTCCGTTAGC
AGAGTGAAGGTGATGCAGGAGGAAGGACTGAGCAAGGGCTTCGGCTTGGTCTGCTTCTCC
TCTGCGGAGGAGGCCAGCCGAGCCATGGCTGAGATGAACGGTCGTATCTTGGGCTCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN
MN.AA..Y.MASLYVGDLH.DVTE..L..KFS..GPVLSIRVCRD..TRRSLGYAYVNF.Q.ADA..ALDTMNFDV..G..IR.MWSQRD..LRKSG.GN
Retrocopy
MNVAAK-YRMASLYVGDLHPDVTEDLLFKKFSTVGPVLSIRVCRDLLTRRSLGYAYVNFLQLADAQKALDTMNFDVVEGRAIRLMWSQRDAYLRKSGIGN


Parental protein
VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGE
VFIKNLDKSIDNK.LY..FSAFG.ILS.KV..D..GSKGYAFVHF..Q.AAD.AIE.MNG..L.D.KVFVGRFK.R..REAEL...A.EFTNVYIKNFG.
Retrocopy
VFIKNLDKSIDNKTLYECFSAFGKILSSKVMSDDQGSKGYAFVHFQNQMAADRAIEEMNGKFLKDCKVFVGRFKHRRDREAELRKHASEFTNVYIKNFGD


Parental protein
EVDDESLKDLFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
..DDE.L.D.FS..G...SVKVM..P.GKS.GFGFVS...HE.A..AVE.MNG..I.G...FVGRAQKKVERQAELK..FEQLK.E.I...Q...LYIKN
Retrocopy
DMDDERLRDIFSKYGRIVSVKVMTNPYGKSRGFGFVSFDSHEAAKRAVEDMNGEAINGQPLFVGRAQKKVERQAELKQMFEQLKKEKIRGRQAAKLYIKN


Parental protein
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
LD..IDDEKLR.EF..FGS....KVM.E.G.SKGFG.VCFSS.EEA..A..EMNGRI.GS
Retrocopy
LDGSIDDEKLRQEFACFGSVSRVKVMQEEGLSKGFGLVCFSSAEEASRAMAEMNGRILGS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide