RetrogeneDB ID:
retro_opri_1148
Organism:
Location:
scaffold_80213:3460-4180 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.25 %
Coverage:
74.61 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
ETFA
Parental gene aliases:
No gene alias available
Parental gene description:
electron-transfer-flavoprotein, alpha polypeptide [Source:HGNC Symbol;Acc:3481]

Genomic region (view in browser)





>retro_opri_1148
TTAGCCCCCATCACTCTAAACACCATCACGGCAGCCAAGCGCCTGGAAGGAGACGTGTCC
TGCCTAGTGGCTGGAATCAAATGTGACGAGGTGGCACAAGAGCTGTGTAAAGTGGAAAGT
GTGGCAAAAGTCCTAGCGGTTCAACACGATGGGTACAAGGGCCTGCTTCCAGAGGAGCTG
ACACCATTGATCCAAGCAACGCAGAAGCAGTTCAATTGCATGCACATTTGTGCCGGAGCA
TCTGCCTTTGGAAAGAACCTTTTGCCTAGAGTAACGGCCAAGCTTGATGCTGCCCGCATT
TCTCACCTCATTGCCATCAAGTCTCCCGACACGTTTCTGAGGACTATTTATGCAGGAAAT
GCTTTGCGCACAGTGAAGTGTGATGAGACAGTGAAGGTGTTTTCTGTCCGAGGAACAGCT
TTCGAAGCTGCGGCAACAAGTGGAGGTGGTGCCAGATCAGAAAACGCTTTCAGTACCTCT
CCGGTGGGAGTGTCAGAGTGGCTCGGCCAGAAACTAACCAAGAGCGACCGGCTTGAGCCG
ACAGGTGCCAAAGTGGTGGTCTCTGTGCGCCGGGGCTTGAAGAGCAGAGAGAACGTTAAG
CTGCTGTATGACCTGGCAGATCAGCTGCATGCCGAGGTTGGTGCTTCTCCAGCTGCTGTT
GATGCTGGCCTTGTTCCCAATGACATGCAAGTTGGACAGACAGGAAAAATCGCAGCACCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LAPITLNAITAAKRLGGDVSCLVAGTKCDKVAQELCKVEGVAKVLVAQHDAYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLDVAPI
LAPITLN.ITAAKRL.GDVSCLVAG.KCD.VAQELCKVE.VAKVL..QHD.YKGLLPEELTPLI.ATQKQFN..HICAGASAFGKNLLPRV.AKLD.A.I
Retrocopy
LAPITLNTITAAKRLEGDVSCLVAGIKCDEVAQELCKVESVAKVLAVQHDGYKGLLPEELTPLIQATQKQFNCMHICAGASAFGKNLLPRVTAKLDAARI


Parental protein
SDIIAIKSPDTFVRTIYAGNALCTVKCDEQVKVFSVRGTAFEAAATSGGSASSENASSTSPVGVSECLDK--LQSDRPELTGXXXXXXXXRGLKSGENFK
S..IAIKSPDTF.RTIYAGNAL.TVKCDE.VKVFSVRGTAFEAAATSGG.A.SENA.STSPVGVSE.L......SDR.E.TG........RGLKS.EN.K
Retrocopy
SHLIAIKSPDTFLRTIYAGNALRTVKCDETVKVFSVRGTAFEAAATSGGGARSENAFSTSPVGVSEWLGQKLTKSDRLEPTGAKVVVSVRRGLKSRENVK


Parental protein
LLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAP
LLYDLADQLHA.VGAS.AAVDAG.VPNDMQVGQTGKI.AP
Retrocopy
LLYDLADQLHAEVGASPAAVDAGLVPNDMQVGQTGKIAAP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide