RetrogeneDB ID:
retro_opri_1152
Organism:
Location:
scaffold_8083:27869-28409 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.22 %
Coverage:
58.6 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
NUDT9
Parental gene aliases:
No gene alias available
Parental gene description:
nudix (nucleoside diphosphate linked moiety X)-type motif 9 [Source:HGNC Symbol;Acc:8056]

Genomic region (view in browser)





>retro_opri_1152
GAAGGGAACTTCTCTCCCAAGTCCAACGAAAAAGATGGGCCAGTGGAGAAAAAGAGCCAG
AATGGCCCATACGAGGTTGAAAATGTCAGGTCTCAGAACCCTGCAGGTCGGACAGGCCTG
GCTGGCCAAGGGCTCCTGGGACGCTGGGGCCCCAGCCATGTTGCTGACCCTTTTATAACC
AGGTGGAAAAGGGGCAGCGAGGGGAATCAAGTTACCCATCCGGTTTCTGGCAACAACTCC
CTGCAATTTGTAGCCGTCCAAAGGAAGGACTGTGGAGAATGGGCCATTCCTGGTGGGATG
GTGGATCCGGGTGCCACTCTGCAGAGGGAATTTGGAGAGGAAGCCATGAATGCCTTACAG
AAATCCAGGATGAAAAGGCGGAAATTGGAGAAACAACTGCACCTGCTCTTCAGCCAGGAC
AAGTTTGAGGTCTATAAGGGCTACGTGGATGATCCACGTAGCACAGATAATGCGTGGGTG
GAGACGCAGGTTGTGAACTACCCTGAGGACATGGGGAAAACGGCCCACCACCTTCTGCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ETNFSPKFNEKDGHVERKSQNGLYEIQNGRPRNPVGRTGLVGRGLLGRWGPNHAADPIITRWKKDGSGSKVTHPVSRKRVLQFVAIKRKDCGEWAIPGGM
E.NFSPK.NEKDG.VE.KSQNG.YE..N.R..NP.GRTGL.G.GLLGRWGP.H.ADP.ITRWK....G..VTHPVS....LQFVA..RKDCGEWAIPGGM
Retrocopy
EGNFSPKSNEKDGPVEKKSQNGPYEVENVRSQNPAGRTGLAGQGLLGRWGPSHVADPFITRWKRGSEGNQVTHPVSGNNSLQFVAVQRKDCGEWAIPGGM


Parental protein
VEPGEKISAALKREFGEEALNSLQKSSAEKKKIEQQLHRLFNQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEVMDNLTL
V.PG....A.L.REFGEEA.N.LQKS.....K.E.QLH.LF.QD....YKGYVDDPR.TDNAW.ET..VNY....G.....L.L
Retrocopy
VDPG----ATLQREFGEEAMNALQKSRMKRRKLEKQLHLLFSQDKFEVYKGYVDDPRSTDNAWVETQVVNYPEDMGKTAHHLLL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide