RetrogeneDB ID:
retro_opri_1163
Organism:
Location:
scaffold_83369:3667-4015 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.9 %
Coverage:
82.31 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL23A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L23a [Source:HGNC Symbol;Acc:10317]

Genomic region (view in browser)





>retro_opri_1163
AAGGCTCTGAAGGCCAAGGGGATGGTTTTGAAAGGTGTCTCCGGGTATAAGGATTGCATG
TCACCTACCTCCCAGTGGCCCAAGCTGCAGCACCTACAGTGCCAATACCCTCGGAAGAGT
GCCCCCAGGAGACACAAGCTTGACCACTGTGCCCTCATCAAGTGCCCCCTGACCACAGAG
TCTGCTACGAAGAAGATGGAAGACAACAGCATATTCGTGTTCATTGTGCATGTCAAGGCT
AGCAAGCATCAGATCAAACAAACCGTGAAGAAGCTCTATGACATTGATGTGGCCAAAGTC
AATACCCTGATCAGGCCTGATGGAGAAAAGAAGGCAGATATGCGGCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTQRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDI
KALKAK..VLKGV......K...SPT...PK.Q.L..Q..YPRKSAPRR.KLDH.A.IK.PLTTESA.KK.EDN...VFIV.VKA.KHQIKQ.VKKLYDI
Retrocopy
KALKAKGMVLKGVSGY---KDCMSPTSQWPKLQHLQCQ--YPRKSAPRRHKLDHCALIKCPLTTESATKKMEDNSIFVFIVHVKASKHQIKQTVKKLYDI


Parental protein
DVAKVNTLIRPDGEKKAYVRL
DVAKVNTLIRPDGEKKA..RL
Retrocopy
DVAKVNTLIRPDGEKKADMRL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide