RetrogeneDB ID:
retro_opri_1169
Organism:
Location:
scaffold_8438:50528-51104 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.78 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
GM2A
Parental gene aliases:
No gene alias available
Parental gene description:
GM2 ganglioside activator [Source:HGNC Symbol;Acc:4367]

Genomic region (view in browser)





>retro_opri_1169
ATGCGCCTTCTGATGCGGACTGCGTCCGTCATTGCTGTCACTTTGTTTCTTGTTGGTGGG
GCAGTCTCCGTGGACGCCGACCACAGCCACCTCAGTAGCTTTTCCTGGGATAACTGTGAT
GATGGGAAAGATCCTGCAGTCATCAAAAGTCTAACGCTGGAACCTGATCCCATTGTCATT
CCTGGCAATGTGACCATCAGCGCTGAGGGCAAGACCAGTGAATTGCTCAGCTCTCCTCAG
AAGGTGAAATTAACTTTGGAGAAGAAAGTGGCAGGCATCTGGATCAAGATCCCCTGTGTG
AAACAATTCGGCAGCTGCACCTATGACATCTGTCATGTGCTGGACAATTTCGTTCGCCCT
GGGAAGCCCTGCCCACAGCTACTAGAAACAAATGGGATTCCATGCCATTGTCCCATCGCA
GAAGGCACCTATTCATTGCCCAGCAGCACTTTCACATTGCCTGCGCTGGTGCTGCCCAAC
TGGCTCGTCTCTGGGAACTATTACATCGAGGGCGTCCTGAGCAACGGCGAGCAGCGTTTG
GCTTGTGTCAAGATCTCGGTCTCTGTAACGGGTAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MHSQMQAALLIALGLLLIDPAVSVLHHQNHMTQPSRFSWDNCDEGKDPAVIKSLTLEPDPIVIPGNVTVSIEGRTSVPLKSPQKVTLTVEKEVAGFWIKV
M...M..A..IA..L.L...AVSV.....H....S.FSWDNCD.GKDPAVIKSLTLEPDPIVIPGNVT.S.EG.TS..L.SPQKV.LT.EK.VAG.WIK.
Retrocopy
MRLLMRTASVIAVTLFLVGGAVSVDADHSHL---SSFSWDNCDDGKDPAVIKSLTLEPDPIVIPGNVTISAEGKTSELLSSPQKVKLTLEKKVAGIWIKI


Parental protein
PCVEQLGSCTYDDICNMLDTLIPPGQLCPEPLHTYGLPCHCPFKEGTYSLPVSEFTVPDLEMPSWLSSGNYRIQGILSSGGEHLACVKVSASVKGK
PCV.Q.GSCTY.DIC..LD....PG..CP..L.T.G.PCHCP..EGTYSLP.S.FT.P.L..P.WL.SGNY.I.G.LS.G...LACVK.S.SV.GK
Retrocopy
PCVKQFGSCTY-DICHVLDNFVRPGKPCPQLLETNGIPCHCPIAEGTYSLPSSTFTLPALVLPNWLVSGNYYIEGVLSNGEQRLACVKISVSVTGK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide