RetrogeneDB ID:
retro_opri_1178
Organism:
Location:
scaffold_88455:398-1225 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.35 %
Coverage:
60.31 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
DCAF12
Parental gene aliases:
No gene alias available
Parental gene description:
DDB1 and CUL4 associated factor 12 [Source:HGNC Symbol;Acc:19911]

Genomic region (view in browser)





>retro_opri_1178
CTGTTCAGGCTGGACGTGCACTCAGGCCAGATCACACACTGCCCCCTGATGGTGGACAGA
GAGCCTCCTCGAGCCGGGAGCCTGCCTGGCTCTGGCATCCATGCCATTGAGCTGAATCCC
TCCAAGACACTTCTGGCCACAGGAGGCAAGAACCCCAATAGCCTGGCTGTGTACCAGCTG
CCCACCATGGACCCTGTGTGCCTGGGTGACATCCAAGGCCACAAAGACTGGATCTTTGCC
ATCGTATGGGTGCGTGACACCATGGTAGTGAGCGGTTCCGTGATGGCACCCTGGCTTTAT
GGCAGTTGGACTGTGAACTTTTCCATGATACCATTGATTCTCACAGTAGCAGTGGTATCC
CTGTGTATGGCCACATCCGTCCAGTGGATATGGTAGATATCTCCACATACAGCCCTCATC
CCAGTCACCACCACGTGCGTGCCCTTGCCTTCAGCAGCAGAAACCAGGAACTGGGATCAG
TTTCCCTGGATGGCTACTTCCACCTCTGGAAACCTCAGAGCAACCTGTCCAGGCTGCTCT
CCATCAGGATGCCCTACTTTGGAGGGAATGTGTGCATGACTTACTGCAATGAGCTCTCCC
TGTATGCTGTGGGCTCTAGTACCTATGTCTCTTTCCTGAGTCCATGCCAGCCACAGGACA
ACTTCTGGGCCCTGCACTGTAGGGAATTTGGCATCAGTGTGTGCTCACTGAGTTACAACC
AGGACATTATCACTTTGGGAACGGTGCATGGCTCCCTGCTCTTCTATGGCATCCGTGCTA
AGAAGTTCCTAGAGGACAGCCCTGAGGTCCGCCAGGACTCTTCTCCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LFVVDVQTSQITKIPILKDREPG-VMTQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGD-DGHKDWIFSIAWISDTMAVSGS-RDGSMG
LF..DV...QIT..P...DREP.......G.GIHAIELNPS.TLLATGG.NPNSLA.Y.LPT.DPVC.GD..GHKDWIF.I.W..DTM.VSGS.RDG...
Retrocopy
LFRLDVHSGQITHCPLMVDREPPRAGSLPGSGIHAIELNPSKTLLATGGKNPNSLAVYQLPTMDPVCLGDIQGHKDWIFAIVWVRDTMVVSGS/RDGTLA


Parental protein
LWEVTDEVLTKSDARHNMSQVPVYSHITHKALKDIPKEDTNPDNCKVRALAFNDKNKELGAVSLC-YFHLWA-ENTLSRLLSTKLPYCRENVCLAYGSEW
LW....E........H..S..PVY.HI......DI......P....VRALAF...N.ELG.VSL..YFHLW.....LSRLLS...PY...NVC..Y..E.
Retrocopy
LWQLDCELFHDTIDSHSSSGIPVYGHIRPVDMVDISTYSPHPSHHHVRALAFSSRNQELGSVSLDGYFHLWKPQSNLSRLLSIRMPYFGGNVCMTYCNEL


Parental protein
TVYAEGSQAHVSFLDPRQPSYNVKSVCSRERGSGIRSVSFYEHIITVGTGQGSLLFYDIRAQRFLEERLSACYGSKP
..YA.GS...VSFL.P.QP..N......RE.G....S.S....IIT.GT..GSLLFY.IRA..FLE........S.P
Retrocopy
SLYAVGSSTYVSFLSPCQPQDNFWALHCREFGISVCSLSYNQDIITLGTVHGSLLFYGIRAKKFLEDSPEVRQDSSP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide