RetrogeneDB ID:
retro_opri_1189
Organism:
Location:
scaffold_9118:49617-49890 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
85.71 %
Coverage:
65.47 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
UBE2D3
Parental gene aliases:
No gene alias available
Parental gene description:
ubiquitin-conjugating enzyme E2D 3 [Source:HGNC Symbol;Acc:12476]

Genomic region (view in browser)





>retro_opri_1189
GAGCTAAGTGATCTGGCCCGTGACCCTCCAGCACAATGTTCTGCAGGTGCAGTTGGAGAT
GATATGTTTCCCTGGCAAGCCACAGTTATGGGACCTGATGACAGCCCAAGTCAAGGTGGT
GCATTCCTTTTGACAATTCATTTTCCTACAGACTACCCCCTTCGAACCCCCAAGGTTGCA
TTTACAACAAGGATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTCAATATT
CTAAGATCACAGTGGTCTCCTGCTCTGCTTCTA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI
ELSDLARDPPAQCSAG.VGDDMF.WQAT.MGP.DSP.QGG.F.LTIHFPTDYP...PKVAFTTRIYHPNINSNGSICL.ILRSQWSPAL..
Retrocopy
ELSDLARDPPAQCSAGAVGDDMFPWQATVMGPDDSPSQGGAFLLTIHFPTDYPLRTPKVAFTTRIYHPNINSNGSICLNILRSQWSPALLL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide