RetrogeneDB ID:
retro_opri_1213
Organism:
Location:
scaffold_96845:194-866 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.89 %
Coverage:
62.12 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_opri_1213
GAGGACATCTCAGCCATTGAGAAAGAAATGAAGCAGCTGGCCAATGAGCTGAGGCAGAAG
AGGCTGACCCTGGGCTATTCGCAGGCGGACGTGGGCTTCGCCGTGGGAGCGCTGTGTGGG
AAGGTGCTCAGCCAGACCACCATCTGCCGCTTCGAGGCTCAGCAGCTGAGCCTGGCCAAC
ATGTGGAAGCTGCGACCACTGCTGAAAATGTGGCTGCAGGAGGTGGATGAGAAGAACCTT
CTGGGCTTATGCAAAATGGAGATGATCCTGCAGCAGAGCCGGAAGCGGAGATGTGTCAGC
AGGGAGAGACGGATCAGAAACCACCTGGAGAGATTTTTCCTGCAGTGCCCTAAGCCCACG
GCCCAGCAGATCAGCCGCCTTGCAGGCCACCTTCGGCTGCAGCAGGACGTGGTCCGGGTG
TGGTTCCTTAATCGGAGCAGGATGGGCAGTGGGCCCAGCAGCAAGGCCTTGGCTCCGGAG
GCTGTGGTGGCCGCCAAGCCTCCTTTCCCAGTCCCTCCCGTGGGCTTCCCGCTGTGCCCT
GGGCTCCATTTTGAGCTCCCTCTCTCTGGGGGGTGCTGCTTGACACCTCTCTATTCCCCT
GGCCCTGTGTCCACGGGGATGGCCCTCCTACCGGCCCCCATCGCCACCGTGGGCCTCCCC
AGACTTTCCAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QDIKALQKDLEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQ-ARKRR-T
.DI.A..K...Q.A..L.QKR.TLGY.QADVG...G.L.GKV.SQTTICRFEA.QLS..NM.KLRPLL..W..E.D...NL...CK.E...Q..RKRR..
Retrocopy
EDISAIEKEMKQLANELRQKRLTLGYSQADVGFAVGALCGKVLSQTTICRFEAQQLSLANMWKLRPLLKMWLQEVDE-KNLLGLCKMEMILQQSRKRRCV


Parental protein
SIENRVRGNLESLFLQCPKPSLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDCSQREEYDAAGSPFPGAPVSFPLAPGPHFATPGYGSPHFTTLYS
S.E.R.R..LE..FLQCPKP..QQIS..A..L.L..DVVRVWF.NR...G...SS.....E...AA..PFP..PV.FPL.PG.HF..P..G....T.LYS
Retrocopy
SRERRIRNHLERFFLQCPKPTAQQISRLAGHLRLQQDVVRVWFLNRSRMGSGPSSKALAPEAVVAAKPPFPVPPVGFPLCPGLHFELPLSGGCCLTPLYS


Parental protein
SVPFPEGEGFPAVPVAALGSPMHSN
..P...G......P.A..G.P..SN
Retrocopy
PGPVSTGMALLPAPIATVGLPRLSN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide