RetrogeneDB ID:
retro_opri_1216
Organism:
Location:
scaffold_97:130789-131137 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
89.66 %
Coverage:
82.01 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_opri_1216
GTCATCAACTGTGCAGACAACACAGGAGCCAAAAATCTCTACATCATCTCTGTGAAGGGG
ATCAAGGGACGGCTGAACAGGCTCCCTGCCATCGGCACTGGGGACACGGTGATGGCCACA
GTCAAGAAGGGCAAGCCAGAGCTGCGGAAGAAGGTACATCCAACAGTGGTAATTCAACAA
CGAAAGTCATATAGAAGCAAAGATGGTATGTTTCTTTATTTTGAAGATAATGCAAGAGTC
ATAGTAAACAATAAAGGTGAGATGAAAGGTTCTGCCATCACTGGACCAGTTGTAAAGGAG
TGTGCTGACTTGTGGCCCAGGATTGCATCCAACGCAGGCAGCATTGCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFL-FEDNAGVIVNNKGEMKGSAIAGPVAKE
VINCADNTGAKNLYIISVKGIKGRLNRLPA.G.GD.VMATVKKGKPELRKKVHP.VVI.QRKSYR.KDG.FL.FEDNA.VIVNNKGEMKGSAI.GPV.KE
Retrocopy
VINCADNTGAKNLYIISVKGIKGRLNRLPAIGTGDTVMATVKKGKPELRKKVHPTVVIQQRKSYRSKDGMFLYFEDNARVIVNNKGEMKGSAITGPVVKE


Parental protein
CADLWPRI-SNAGSIA
CADLWPRI.SNAGSIA
Retrocopy
CADLWPRIASNAGSIA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide