RetrogeneDB ID:
retro_opri_140
Organism:
Location:
GeneScaffold_2719:360008-360410 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
55.4 %
Coverage:
64.79 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_opri_140
AAAAGTGTCCCCAAGAAGTCAAAGGGCAAGTTGTTAGTGTATGTGCAGACATACCAGGAG
GAACATAAGAGGAAAAACCCAGAGATCCCTGTGAATTTCGCAGAATTTTCCCAGAAGTGC
TCTGAGAGGTGGAAACCAACGTCTGGGAAGGAAAAATCCAAATTTGACCAGATGGCGAAG
GAAGCTAAAGTGCGCTATGATTGGGAAATGAAGGATTATGCACCAGCTAAGGAAGGCAAG
AAAAAAAAGGACCCACATGTCTTTAAAAGACCCCCATCAGGATTCTTCCTCTTCATTTCA
GAATTTTGCCACAAGATCAAATCCACCAACCCTAGAATCTCCATGGGAGATGCAGCCAAG
AAGTTGGGTGAGATGTGGAACAACCTGAGTGATGGTGAAAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSDF
K..PKK..GK...Y...VQT..EEHK.K.P...VNF.EFS.KCSERWK..S.KEK.KF..MAK..K.RY..EMK.Y.P.K....K...DP...KRPPS.F
Retrocopy
KSVPKKSKGKLLVY---VQTYQEEHKRKNPEIPVNFAEFSQKCSERWKPTSGKEKSKFDQMAKEAKVRYDWEMKDYAPAK--EGKXXXDPHVFKRPPSGF


Parental protein
FLFCSEYRPKIKE-HPGLSIGDMAKKLGEMCNTAADDKQ
FLF.SE...KIK...P..S.GD.AKKLGEM.N...D...
Retrocopy
FLFISEFCHKIKSTNPRISMGDAAKKLGEMWNNLSDGEK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide