RetrogeneDB ID:
retro_opri_15
Organism:
Location:
scaffold_24541:8411-9701 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
100.0 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_opri_15
ATGTCTTGCCACCTCAATTCGGAAAACCACCTGGATCCAGGCCCCATCTATGTCCGAGAA
AATGGACAGCTGCACATGGTCAGCCTGGCTCTGAATGGTGTCAGGAGTGGCCAGCCGCAA
CCGAGGCCTTTCGGACTGTTTTCCAAAGGCTTCTCTGTTGAGCTGTGCATGAACAGGGAA
GACGACACTGCCCAGAAGGAGAAGACGGATCATTTCATCTTCACGTACACCCGGGAGGGC
AATCTCCGCTACTCCGCCAAGTCGCTCTTCAGCCTCGTCCTGGACTTCATCTCCGACAAC
ATTGACCATGTCGATTCCCTCATTGGCTTTCCCGAGCAGATTGCCGAGAGACTGTTCTCT
GCAGCCGAAGCCAGACAAAAGTTCACGGAGCCGGGCACAGGGCTGAGGGCCTTGCGGAAA
TTCACCGAGGCCTACGGGCGTCTGGTGCTCTGCTCACTATGTCTGCGGGACAGGTATCTG
GTGATTTCAGAGAAACTCGAGGAGATAAAGTCCTTCCGGGAGCTTACCTGCTTGGATCTT
TCCTGTTGCAAGCTTGGAGATGAGCATGAGCTTCTAGAACACCTCACCAATGAGGCCCTG
TCTAGTGTCACTCAGCTCCACCTGAAGGATAATTGTTTGTCTGACGCCGGGGTGCGGAAA
ATGACAGCACCCGTTCGCGTGATGAAACGAGGCCTTGGGAATCTAACACTATTAGACTTA
TCCTGTAACCCTAAGATCACAGATGCAGGAATTGGATACCTGTTCTGTTTTAGAAAGCTA
AGCTGCTTAGATATCTCTGGGACAGGGCTCAAGGATGTAAACGCCATCAAGCACAAGCTG
CAGGCCCGCATGGGCCTCGTCCTCTCCCAAGTGTCTCTGAAGGAATTCGATCACACTAAC
TGCAAGACCGAGGGCTGGGCCGACCAGATTGTCCGGCAGTGGGAGCGCCTGACGGTGAAA
CCCCTGAAGAAAGCGGCTGTCGTGGAGCCTCGAAAGACAGCTCAGTACTTCTATGGCAAC
CGCTTCCTGGCCGAGGCCTCTTTACGATGTCCCCTGGACGACACCTGCCTGGACGCCAGT
GAGAAGCTCCAGTTCCGGAAAGAGAAGCCTACAGAGGCCCAGGGGCCGTTGTTGAACTGT
GACACTGCCATCTCAATGCAGGAGCCCCAGAAGAGCAAGAAGAGGACTTTTGAGGAGTCA
GAGAAGGAGCCGAGTAACTCCCCACAGGCTCCCAAGCAGAAGTATGTGTGCCTCACTGTG
CAGGACTGGGACCTGCTGAATTCCTACTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSCHLNSENHLDPGPIYVRENGQLHMVSLALNGVRSGQPQPRPFGLFSKGFSVELCMNREDDTAQKEKTDHFIFTYTREGNLRYSAKSLFSLVLDFISDN
MSCHLNSENHLDPGPIYVRENGQLHMVSLALNGVRSGQPQPRPFGLFSKGFSVELCMNREDDTAQKEKTDHFIFTYTREGNLRYSAKSLFSLVLDFISDN
Retrocopy
MSCHLNSENHLDPGPIYVRENGQLHMVSLALNGVRSGQPQPRPFGLFSKGFSVELCMNREDDTAQKEKTDHFIFTYTREGNLRYSAKSLFSLVLDFISDN


Parental protein
IDHVDSLIGFPEQIAERLFSAAEARQKFTEPGTGLRALRKFTEAYGRLVLCSLCLRDRYLVISEKLEEIKSFRELTCLDLSCCKLGDEHELLEHLTNEAL
IDHVDSLIGFPEQIAERLFSAAEARQKFTEPGTGLRALRKFTEAYGRLVLCSLCLRDRYLVISEKLEEIKSFRELTCLDLSCCKLGDEHELLEHLTNEAL
Retrocopy
IDHVDSLIGFPEQIAERLFSAAEARQKFTEPGTGLRALRKFTEAYGRLVLCSLCLRDRYLVISEKLEEIKSFRELTCLDLSCCKLGDEHELLEHLTNEAL


Parental protein
SSVTQLHLKDNCLSDAGVRKMTAPVRVMKRGLGNLTLLDLSCNPKITDAGIGYLFCFRKLSCLDISGTGLKDVNAIKHKLQARMGLVLSQVSLKEFDHTN
SSVTQLHLKDNCLSDAGVRKMTAPVRVMKRGLGNLTLLDLSCNPKITDAGIGYLFCFRKLSCLDISGTGLKDVNAIKHKLQARMGLVLSQVSLKEFDHTN
Retrocopy
SSVTQLHLKDNCLSDAGVRKMTAPVRVMKRGLGNLTLLDLSCNPKITDAGIGYLFCFRKLSCLDISGTGLKDVNAIKHKLQARMGLVLSQVSLKEFDHTN


Parental protein
CKTEGWADQIVRQWERLTVKPLKKAAVVEPRKTAQYFYGNRFLAEASLRCPLDDTCLDASEKLQFRKEKPTEAQGPLLNCDTAISMQEPQKSKKRTFEES
CKTEGWADQIVRQWERLTVKPLKKAAVVEPRKTAQYFYGNRFLAEASLRCPLDDTCLDASEKLQFRKEKPTEAQGPLLNCDTAISMQEPQKSKKRTFEES
Retrocopy
CKTEGWADQIVRQWERLTVKPLKKAAVVEPRKTAQYFYGNRFLAEASLRCPLDDTCLDASEKLQFRKEKPTEAQGPLLNCDTAISMQEPQKSKKRTFEES


Parental protein
EKEPSNSPQAPKQKYVCLTVQDWDLLNSY
EKEPSNSPQAPKQKYVCLTVQDWDLLNSY
Retrocopy
EKEPSNSPQAPKQKYVCLTVQDWDLLNSY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide