RetrogeneDB ID:
retro_opri_16
Organism:
Location:
GeneScaffold_4350:155134-155584 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.56 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CALM2
Parental gene aliases:
No gene alias available
Parental gene description:
calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445]

Genomic region (view in browser)





>retro_opri_16
ATGGCTGACCAGCTGACTGAGGAACAGGTAGCCACTTTCAAGGAGGCTTTCTCTCTGTTT
GACAAGGATGGAGACGGCAGCATCACCACCCAGGAGCTGGGTACTGTCATGAGGTCCCTG
GGCCAGAACCCTACCGAGGCGGAACTCCAGGACATGGTGAGAGAGATTGACAGGGATGGC
AGTGGTACTGTGGACTTCTCTGAGTTCCTGGGCATGATGGTCAGGCAGATGAAGGACACG
CACAGTGAGGAGGAGATCCGGGAAGCCTTCCGCGTGTTTGACAAAGATGGTAATGGCTAT
GTCAGTGCTGCTGAGCTGAGACACGTGATGACCAGGCTAGGAGAGAAGCTGAGCGACGAG
GAAGTGGACGAAATGATCCGGTCAGCAGACATAGATGGAGACGGACAGGTGAACTACGAG
GAGTTTGTCCATATGCTGCTGTCTAAGTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGY
MADQLTEEQ.A.FKEAFSLFDKDGDG.ITT.ELGTVMRSLGQNPTEAELQDM..E.D.DG.GT.DF.EFL.MM.R.MKDT.SEEEIREAFRVFDKDGNGY
Retrocopy
MADQLTEEQVATFKEAFSLFDKDGDGSITTQELGTVMRSLGQNPTEAELQDMVREIDRDGSGTVDFSEFLGMMVRQMKDTHSEEEIREAFRVFDKDGNGY


Parental protein
ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK
.SAAELRHVMT.LGEKL.DEEVDEMIR.ADIDGDGQVNYEEFV.M...K
Retrocopy
VSAAELRHVMTRLGEKLSDEEVDEMIRSADIDGDGQVNYEEFVHMLLSK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide