RetrogeneDB ID:
retro_opri_17
Organism:
Location:
GeneScaffold_4292:30280-30799 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.28 %
Coverage:
93.79 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CETN3
Parental gene aliases:
No gene alias available
Parental gene description:
centrin, EF-hand protein, 3 [Source:HGNC Symbol;Acc:1868]

Genomic region (view in browser)





>retro_opri_17
ATGGCGGCCAGCTTCAAGAAGCCAAACCCGGCCTCCACCAGCCAGAGGAAAAAGTCGTGT
CCGAAGCCCGAACTCACTGAAGAGCAGAAGCAGGAAGTTCGGGAGGCGTTTGACCTCTTC
GATGCTGACGGAAGCGGCACCATCGACGTGAAGGAGCTGAAGGTGGCCATGAGGGCGTTG
GGCTTCGAACCCAAGAAGGAAGAGATCAAGAAAATGATCTCAGAGGTAGACAAGGAGGGC
ACGGGAAAGATCAGCTTCAATGACTTCCTGGCCGTGATGACTCAGAAGATGGCTGAGAAG
GACACCAAAGAAGAAATCCTGAAGGCATTCCGGCTCTTTGATGACGACGAGACAGGGAAG
ATATCTTTCAAAAATCTCAAGCGTGTGGCCAACGAGCTGGGGGAGAACCTCACGGATGAG
GAGCTGCAGGAAATGATCGACGAAGCAGATCGGGATGGAGACGGCGAAGTGAATGAAGAG
GAGTTCCTTAAGATCATGAAGAAGACCAGCCTCTATTAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KTKRKKRRELSEEQRQEIKDAFELFDTDKDDAIDYHELKVAMRALGFDVKKADVLKILKDYDREATGKITFEDFNEVVTDWILERDPHEEILKAFKLFDD
..K.....EL.EEQ.QE...AF.LFD.D....ID..ELKVAMRALGF..KK....K.....D.E.TGKI.F.DF..V.T....E.D..EEILKAF.LFDD
Retrocopy
RKKSCPKPELTEEQKQEVREAFDLFDADGSGTIDVKELKVAMRALGFEPKKEEIKKMISEVDKEGTGKISFNDFLAVMTQKMAEKDTKEEILKAFRLFDD


Parental protein
DDSGKISLRNLRRVARELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIM
D..GKIS..NL.RVA.ELGEN..DEEL..MI.E.D.DGDGE.N.EEF..IM
Retrocopy
DETGKISFKNLKRVANELGENLTDEELQEMIDEADRDGDGEVNEEEFLKIM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide