RetrogeneDB ID:
retro_opri_203
Organism:
Location:
GeneScaffold_3576:198760-199204 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.76 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL27A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L27a [Source:HGNC Symbol;Acc:10329]

Genomic region (view in browser)





>retro_opri_203
GTGCCATCCAGACTGAGGAAGACACAGAAACTGTGCGGCCACGTGAGCCCTGGCCATGAC
CGCATCGCCAAGTACCGGAAGCACCCGGGAGGCCAGAAAGATGCTGGTGGCATGCATCAC
CGCGGGATCAACTTCCACAAATATCACTCAGGTTACTTGGGGAAAGTTGGTATAAGGCAT
TACCACTTGAACCGGAACCAGAGCTTCTGCCCAACTGTCAACCTGGATAGGCTGTGGACG
CTGGTCAGTGAGCAGACCTGGGTGAACGCTGCCAAGAACAAAACGAGAGCTGCCCCCATC
ATTGATGTGGTGAGGTTGGGCTACTATAAAGTTCTAGGAACAGGAAAGCTCTCAAAGCTC
CCAGTCATTGTCAAAGCCAAATTCTTCCGTAGAAAAGCTGAAGAGAAGATTAAGGACATT
GGGGGAGCCTGTGTCCTGGTGGCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPI
.PSRLRKT.KL.GHVS.GH.RI.K.RKHPGG...AGGMHH..INF.KYH.GY.GKVG.RHYHL.RNQSFCPTVNLD.LWTLVSEQT.VNAAKNKT.AAPI
Retrocopy
VPSRLRKTQKLCGHVSPGHDRIAKYRKHPGGQKDAGGMHHRGINFHKYHSGYLGKVGIRHYHLNRNQSFCPTVNLDRLWTLVSEQTWVNAAKNKTRAAPI


Parental protein
IDVVRSGYYKVLGKGKLPKLPVIVKAKFFSRRAEEKIKGVGGACVLVA
IDVVR.GYYKVLG.GKL.KLPVIVKAKFF.R.AEEKIK..GGACVLVA
Retrocopy
IDVVRLGYYKVLGTGKLSKLPVIVKAKFFRRKAEEKIKDIGGACVLVA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide