RetrogeneDB ID:
retro_opri_215
Organism:
Location:
GeneScaffold_3697:132886-133582 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
79.31 %
Coverage:
91.7 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CNOT8
Parental gene aliases:
No gene alias available
Parental gene description:
CCR4-NOT transcription complex, subunit 8 [Source:HGNC Symbol;Acc:9207]

Genomic region (view in browser)





>retro_opri_215
GACACCGAGTTTCCAGGTGTGGTTGCAAGACCTATTGGTGAATTCAGGAGCAATGCTGAC
TATCAGTACCAACTGTTGCGGTGTAACGTACACTTGCTAAAGATAATTCAGCTAAGACTG
ACCTTTTTGAATGAGCAAGGAGAATACCCGCCAGGAACTTCAACTTGGCAGTTTAATTTT
AAATTTAATTTGACGGAGGACATGTATGCCCAGGACTCAATAGAGCTGCTAACAACATCT
GGTATCCAATTTAAAAAACATGAAGAGGCAGGAATTGAGACCCAGTACTTTGCAGAACTT
CTAATGACTTCCGGAGTGGTCCTTTGTGAAGGGGTCAAATGGCTATCATTTCATAGCGGT
TATGACTTTGGCTATTTAATAAAAATCCTGACAAACTCTAATTTGCCTGAAGAAGAACTT
GGTTTCTTTGAGATCCTTCGGTTGTTTTTTCTTGCCATTTATGACGTGAAGTACCTCATG
AAGAGCTGCAAAAATCTCAAGGGTGGATTGCAAGAAGTTGCTGAACAGTTAGAGCTGGAA
CGGATAGGACCACAGCATCAGGCAGGATCTGATTCATTGCTCACAGGAATGGCCTTTTTC
AAAATGAGAGAAATGTTCTTTGAAGATCATATTGATGATGCCAAATATTGTGGTCATTCG
TATGGCCTTGGTTCTGGTTCATCCTATGTACAGAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAEL
DTEFPGVV.RPIGEFRS..DYQYQLLRCNV.LLKIIQL.LTF.NE.GEYP.G..TWQFNFKFNLTEDMY.QDSI.LL..SG.QF.KHEE.GI.T..FAEL
Retrocopy
DTEFPGVVARPIGEFRSNADYQYQLLRCNVHLLKIIQLRLTFLNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEAGIETQYFAEL


Parental protein
LMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFF
LMTSGVVLC..VKWLSFHSGYDFGY..K.LT.S.LPEEE..FF.IL.LFF..IYDVKYLMKSCKNLKGGLQEVA.QL.L.RIG.QHQAGSDSLLTGMAFF
Retrocopy
LMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELGFFEILRLFFLAIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFF


Parental protein
RMKELFFEDSIDDAKYCGRLYGLGTGVAQKQN
.M.E.FFED.IDDAKYCG..YGLG.G....QN
Retrocopy
KMREMFFEDHIDDAKYCGHSYGLGSGSSYVQN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide