RetrogeneDB ID:
retro_opri_300
Organism:
Location:
GeneScaffold_4882:299009-299534 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
98.29 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CBX3
Parental gene aliases:
No gene alias available
Parental gene description:
chromobox homolog 3 [Source:HGNC Symbol;Acc:1553]

Genomic region (view in browser)





>retro_opri_300
CGAAAAATGGGAAAGAAGCAGAATGGAAAGAGTAAAAAGGTCGAAGAAGCAGAACCTGAA
GAGTTTGTGGTGGAGAAGGTGTTGGACCGCCGTGTGGTCAATGGGAAGGTGGAGTACTTC
CTGAAGTGGAAGGGATTCACAGATGCTGACAACACTTGGGAACCTGAAGAAAATCTAGAT
TGTCCAGAGTTAATTGAAGCATTTCTTAATTCTCAAAAAGCTGGTAAAGAAAAAGACGGT
GCCAAAAGAAAATCTTTATCTGACAGTGAATCTGATGACAGTAAATCAAAGAAGAAAAGA
GATGCTGCTGACAAACCGAGGGGCTTTGCCAGGGGTCTTGATCCTGAACGAATAAGTGGT
CCCACAGACAGCAGTGGGGAGTTGATGTTTCTCATGAAGTGGAAAGATTCAGATGAAGCT
GACTTGGTGCTGGCAAAAGAAGCAAATATGAAATGTCCTCAGATTGTAATTGCTTTTTAT
GAAGAGAGACTAACTTGGCATTCTTGTCCAGAAGATGAAGCTCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAGKEKDGAKRKSLSDSESDDSKSKKKR
.KMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAGKEKDGAKRKSLSDSESDDSKSKKKR
Retrocopy
RKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAGKEKDGAKRKSLSDSESDDSKSKKKR


Parental protein
DAADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ
DAADKPRGFARGLDPERI.G.TDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ
Retrocopy
DAADKPRGFARGLDPERISGPTDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide