RetrogeneDB ID:
retro_opri_327
Organism:
Location:
GeneScaffold_5259:44145-44616 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
53.42 %
Coverage:
54.33 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
YBX2
Parental gene aliases:
No gene alias available
Parental gene description:
Y box binding protein 2 [Source:HGNC Symbol;Acc:17948]

Genomic region (view in browser)





>retro_opri_327
CCCTCCACCACAGGCATGGGCCTCCCAGAGCTGGCACATGCCAGTGCAGACAAGAAGATT
CTCGCCACCAAAGTGCTGGGCAGAGTGAAATGGTTCAACGTCAAGGAGCGCTACGGATTT
ATCACCACAACAGATACCCAGGAGGACATCTTTGTCCACCAATCAGCTATACAAAAGAAC
AACCCCTGGAAGTACCTGCCCAGCGTGGGAGATGGTGAGCTAGTTGAGTTCGACGTGGTG
GAGGGCAAGAAGGGTGTGGAAGCAGCCAATGTCACCGGCCCCGGGGGAGTTGCTGTCCAG
GGCAGCAAGTATGTGCCTGAGCGTACCCGATCCCGGCGCTCCCCACGGCGGAGGGCTCCT
AGGCCCCACTACGCACATGGCTGCCTCCCCACTGACAGTGATAGCTCAGATGGAGCAGCT
GATGGCCAGGCCTGTCCTGGCTGGCGCCGAGTCAGGCGGCGAAGGCTCCCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PATAASGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVSV
P.T...G.P...A...ADK..LA..VLG.VKWFNV...YGFI...DT.ED.FVHQ.AI..NNP.K.L.SVGDGE.VEFDVVEG.KG.EAANVTGPGGV.V
Retrocopy
PSTTGMGLPEL-AHASADKKILATKVLGRVKWFNVKERYGFITTTDTQEDIFVHQSAIQKNNPWKYLPSVGDGELVEFDVVEGKKGVEAANVTGPGGVAV


Parental protein
KGSRYALNR----RSFRRFILRPRSAASSLMVTEASSVGQNLGSEGERAEDSGQRLRRRPP
.GS.Y...R....RS.RR...RP..A...L.....SS.G......G..........RRR.P
Retrocopy
QGSKYVPERTRSRRSPRRRAPRPHYAHGCLPTDSDSSDG---AADGQACPGWRRVRRRRLP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide