RetrogeneDB ID:
retro_opri_331
Organism:
Location:
GeneScaffold_5288:624599-624950 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
91.45 %
Coverage:
75.32 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS27A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S27a [Source:HGNC Symbol;Acc:10417]

Genomic region (view in browser)





>retro_opri_331
CAGATCTTCGTAAAGACCCTTACGGACAAGACCATCACCCTCGAGGAAGAGCCCTCGGAT
ACGATAGAAAATGTAAAAGCCAAAACCCACGATAAGGAAGGAATTCCTCCGGATCAGCAA
AGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCAAACTTCATCTGACTACAACATT
CAGAAGGAGTCCACTCTGCACCTGGTGCTGAGACTCCGTGGTGGTGCCAAGAAAAGGAAG
AAGAAGTCGTACACCACTCCCAAGAAGAACAAGCACAAGAGGAAGAAGGTGACGCTGGCT
GTCCTCAAGTACTACAAGGTGGATGACAATGGTAAAATCAGCCGCCTGCGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QIF-QTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLA
QIF..TLT.KTITLE.EPSDTIENVKAK..DKEGIPPDQQRLIFAGKQLEDG.T.SDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKV.LA
Retrocopy
QIFVKTLTDKTITLEEEPSDTIENVKAKTHDKEGIPPDQQRLIFAGKQLEDGQTSSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVTLA


Parental protein
VLKYYKVDENGKISRLR
VLKYYKVD.NGKISRLR
Retrocopy
VLKYYKVDDNGKISRLR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide